HHsearch alignment for GI: 254780545 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=98.27 E-value=3.7e-05 Score=56.31 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=74.1
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHCCCCC---C-----EECCCHHHHHHHHH-HCC----HHHHHHHHHHHHH----HC
Q ss_conf 123331100378742588899997424699---7-----02058578864442-033----2459999999987----37
Q gi|254780545|r 178 GRIPHGVLLVGPPGTGKTLLARAVAGEANV---P-----FFTISGSDFVELFV-GVG----ASRVRDMFEQAKN----NS 240 (647)
Q Consensus 178 ~~~p~g~ll~GppGtGKTlla~a~a~e~~~---~-----f~~~~~s~~~~~~~-g~g----~~~vr~lf~~a~~----~~ 240 (647)
T Consensus 16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id~iR~l~~~i~~~p~~g~ 95 (290)
T PRK05917 16 QKVPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIETPRAIKKQIWIHPYEAN 95 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99660687689998659999999999985789961688987468998599615777887867899999999641864688
Q ss_pred CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCC
Q ss_conf 8012063235641445578988626889889989985303235778299996298100883331-65642
Q gi|254780545|r 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRF 309 (647)
Q Consensus 241 p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRf 309 (647)
T Consensus 96 ~KV~IId~Ad~Mn--------------~~AaNALLKtLE--EPP~~tvfILit~~~~~lLpTI~SRCQ~I 149 (290)
T PRK05917 96 YKIYIIHEADRMT--------------LDAISAFLKVLE--DPPKHSVIILTSAKPQRLPPTIRSRSLSI 149 (290)
T ss_pred CEEEEECCHHHHC--------------HHHHHHHHHHHC--CCCCCEEEEEEECCHHHCCHHHHHCCCEE
T ss_conf 2699975677638--------------999999999734--79878599998699254823776335116