HHsearch alignment for GI: 254780545 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.89 E-value=1.2e-08 Score=81.45 Aligned_cols=187 Identities=27% Similarity=0.407 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEE-----CCCHHHHHHH
Q ss_conf 69889852889999999998743356766420123331100378742588899997424699702-----0585788644
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFF-----TISGSDFVEL 220 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~-----~~~~s~~~~~ 220 (647)
T Consensus 14 ~f~~~vgq~~v~~~l~~a~~-----------~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i 82 (696)
T PRK06872 14 TFSEVVGQEHILTALSNGLK-----------ENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAI 82 (696)
T ss_pred CHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 56452385999999999997-----------1986304751178988888999999998678999999978886225767
Q ss_pred HHH--------CCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 420--------3324-----599999999873780-----1206323564144557898862688988998998530323
Q gi|254780545|r 221 FVG--------VGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282 (647)
Q Consensus 221 ~~g--------~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~ 282 (647)
T Consensus 83 ~~g~~~d~~eidaas~~~v~~~r~l~~~~-~~~p~~~~~kvy~idevhmls--------------~~~fnallktle--e 145 (696)
T PRK06872 83 EEGNFIDLIEIDAASRTKVEDTRELLDNV-QYKPVVGRFKVYLIDEVHMLS--------------RHSFNALLKTLE--E 145 (696)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCCCEEEEEEEHHHHCC--------------HHHHHHHHHHHC--C
T ss_conf 44787754675056557889999999845-457767754799970054438--------------999999987502--7
Q ss_pred CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 5778299996298100883331-6564231410001347889-9999998548877732110245441203798999999
Q gi|254780545|r 283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGR-EHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360 (647)
Q Consensus 283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r-~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~ 360 (647)
T Consensus 146 pp~~v~f~latt~~~k~p~tilsrc~~f~~~~-~~~~~i~~~l~~i~~--~e~~~~~~~-al~~~a~~a~g-s~rdalsl 220 (696)
T PRK06872 146 PPEYVKFLLATTDPQKLPITILSRCMQFHLKA-LDQTQIAQHLEFILT--QENIPFESP-ALEKLAKAAQG-SIRDSLSL 220 (696)
T ss_pred CCCCEEEEEECCCHHHCCHHHHHHHHHEECCC-CCHHHHHHHHHHHHH--HCCCCCCHH-HHHHHHHHCCC-CHHHHHHH
T ss_conf 97544899843863227488987665300268-999999999999999--849977999-99999997589-56778889
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780545|r 361 VNEAA 365 (647)
Q Consensus 361 ~~eAa 365 (647)
T Consensus 221 ~dqai 225 (696)
T PRK06872 221 TDQAI 225 (696)
T ss_pred HHHHH
T ss_conf 99999