HHsearch alignment for GI: 254780545 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=98.82 E-value=2.7e-07 Score=71.78 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=105.7
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCC
Q ss_conf 311003787425888999974246---99702058578864442033245999999998737801206323564144557
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGI 258 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~ 258 (647)
T Consensus 40 ~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~-~---~----~~~l~~l~~~--d~l~iDDi~~i~g~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-F---S----PAVLENLEQQ--DLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH-C---C----HHHHHHHHHC--CEEEEECHHHHCCCH--
T ss_conf 87999899999889999999999997189859997377564-0---6----9999876547--979996723424883--
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC-
Q ss_conf 898862688988998998530323577829999629810088---3331656423--1410001347889999999854-
Q gi|254780545|r 259 GLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHSR- 332 (647)
Q Consensus 259 ~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~- 332 (647)
T Consensus 108 -------~~e~~lF~l~N~l~--~~~~~~ll~ss~~~p~~l~~~l~DL~S--Rl~~~~~~~i~~~dd~~~~~iL~~~a~~ 176 (229)
T PRK06893 108 -------EWELAIFDLFNRIK--ESGKTLLLISANQSPHALQIKLPDLAS--RLTWGEIYQLNDLTDEQKIEVLQRNAYQ 176 (229)
T ss_pred -------HHHHHHHHHHHHHH--HCCCCEEEEECCCCHHHHCCHHHHHHH--HHHCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf -------89999999999999--759917998579883322100267999--9968836996677757999999999996
Q ss_pred -CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf -88777321102454412037989999999998764553202421045689997
Q gi|254780545|r 333 -NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 333 -~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 177 rgl~l~~~v-~~yl~~r~~-R~~~~l~~~l~~Ld~~s-l~~kr~iTiplvkevL 227 (229)
T PRK06893 177 RGIELSDET-ANFLLKRLD-RDMHTLFDALDLLDKAS-LQAQRKLTIPFVKEIL 227 (229)
T ss_pred CCCCCCHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHH
T ss_conf 499999899-999999834-78999999999999999-9808999999999986