HHsearch alignment for GI: 254780545 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.43  E-value=0.0062  Score=40.22  Aligned_cols=133  Identities=22%  Similarity=0.325  Sum_probs=66.0

Q ss_pred             EEECCCCCHHHHHHHHHHHC-----C--CCCCEECCCH-----HHHHHHH---HH------CCHHHHHHHHHHHHHHCCH
Q ss_conf             10037874258889999742-----4--6997020585-----7886444---20------3324599999999873780
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAG-----E--ANVPFFTISG-----SDFVELF---VG------VGASRVRDMFEQAKNNSPC  242 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~-----e--~~~~f~~~~~-----s~~~~~~---~g------~g~~~vr~lf~~a~~~~p~  242 (647)
T Consensus       179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~--~d  256 (404)
T PRK06995        179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRN--KH  256 (404)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC--CC
T ss_conf             8986688876375899999999998389837999768754789999999998759559995999999999997089--99


Q ss_pred             HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCHHHCCCCCC--CCEEEECHHH
Q ss_conf             1206323564144557898862688988998998530323-577829999629810088333165642--3141000134
Q gi|254780545|r  243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE-SSEGVILIAATNRPDVLDAALLRPGRF--DRQITVPNPD  319 (647)
Q Consensus       243 iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~-~~~~v~vi~aTn~~~~lD~al~RpgRf--d~~i~~~~P~  319 (647)
T Consensus       257 lILIDT---aGrs-------~rD~---~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDE  323 (404)
T PRK06995        257 IVLIDT---VGMS-------QRDR---MVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDE  323 (404)
T ss_pred             EEEEEC---CCCC-------CCCH---HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             999809---9989-------7688---89999999973578852899977989999999999984469998399830406


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             788999999985
Q gi|254780545|r  320 IVGREHILMVHS  331 (647)
Q Consensus       320 ~~~r~~i~~~~~  331 (647)
T Consensus       324 t~~~G~iln~~~  335 (404)
T PRK06995        324 AASLGGALDTVI  335 (404)
T ss_pred             CCCHHHHHHHHH
T ss_conf             797239999999