HHsearch alignment for GI: 254780545 and conserved domain: PRK07132
>PRK07132 DNA polymerase III subunit delta'; Validated.
Probab=98.34 E-value=4.7e-06 Score=62.77 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEC----CC-HHHHHHHHH-HCC--HHHHHHHH
Q ss_conf 99987433567664201233311003787425888999974246997020----58-578864442-033--24599999
Q gi|254780545|r 162 EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFT----IS-GSDFVELFV-GVG--ASRVRDMF 233 (647)
Q Consensus 162 ~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~----~~-~s~~~~~~~-g~g--~~~vr~lf 233 (647)
T Consensus 5 ~iv~~L~nai~~----~klsHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~i~~~i 80 (303)
T PRK07132 5 NIIKSLDNLAKQ----NKISHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEEFLSAI 80 (303)
T ss_pred HHHHHHHHHHHC----CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 899999999984----9976168867899867999999999997299878887545653230413322200168899999
Q ss_pred HHHHHHC-----CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCC
Q ss_conf 9998737-----8012063235641445578988626889889989985303235778299996298100883331-656
Q gi|254780545|r 234 EQAKNNS-----PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPG 307 (647)
Q Consensus 234 ~~a~~~~-----p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-Rpg 307 (647)
T Consensus 81 ~~~~~~~~~~~~~Kv~IIdea~~lt--------------~~A~NaLLKtLE--EPp~~~~fil~t~~~~~il~TI~SRCq 144 (303)
T PRK07132 81 EKFSFSSFVSNQKKILIIKNIEKTS--------------NSSLNALLKTIE--EPSKNTYFLLTTKNINKVIPTIVSRCQ 144 (303)
T ss_pred HHHHHCCCCCCCEEEEEEECHHHCC--------------HHHHHHHHHHCC--CCCCCEEEEEEECCHHHCCHHHHHCCE
T ss_conf 9997366556870699981655339--------------999999998703--898684899972882438377863665
Q ss_pred CCCCEEEECHHHHHHHHHHH
Q ss_conf 42314100013478899999
Q gi|254780545|r 308 RFDRQITVPNPDIVGREHIL 327 (647)
Q Consensus 308 Rfd~~i~~~~P~~~~r~~i~ 327 (647)
T Consensus 145 ~~~----f~~~~~~~i~~~l 160 (303)
T PRK07132 145 VIN----VKEPDQQKILAKL 160 (303)
T ss_pred EEE----CCCCCHHHHHHHH
T ss_conf 663----7889999999999