HHsearch alignment for GI: 254780545 and conserved domain: PRK07399
>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=98.67 E-value=3.2e-07 Score=71.24 Aligned_cols=181 Identities=19% Similarity=0.283 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC----------EECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246997----------0205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP----------FFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~----------f~~~~~s 215 (647)
T Consensus 2 ~F~~iiGq~~~~~~L~~ai~-----------~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIE-----------QNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred CCCCCCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 83312594999999999998-----------5996744877899983299999999999857899997665587518999
Q ss_pred HHHHH---HHHCC----------------------HHHHHHHHHHHHH----HCCHHEEHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 88644---42033----------------------2459999999987----3780120632356414455789886268
Q gi|254780545|r 216 DFVEL---FVGVG----------------------ASRVRDMFEQAKN----NSPCIVFVDEIDAVGRHRGIGLGGGNDE 266 (647)
Q Consensus 216 ~~~~~---~~g~g----------------------~~~vr~lf~~a~~----~~p~iifiDeida~~~~r~~~~~~~~~e 266 (647)
T Consensus 71 Dl~~i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m-------------- 136 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------- 136 (314)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHC--------------
T ss_conf 778860562003454557789876530268777879999999999731885688479998897871--------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 89889989985303235778299996298100883331656423141000134788999999985488777321102454
Q gi|254780545|r 267 REQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIA 346 (647)
Q Consensus 267 ~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la 346 (647)
T Consensus 137 ~~~AaNaLLKtLE--EP~~~~fILi-t~~~~~lLpTI~S--RC-Q~i~F~~l~~~~i~~~L~~~~~~--~~~~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLE--EPGNGTLILI-APSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDN--INEILDHPELL 208 (314)
T ss_pred CHHHHHHHHHHHC--CCCCCEEEEE-ECCHHHCCHHHHC--CC-EEEECCCCCHHHHHHHHHHCCCC--CCCCCCHHHHH
T ss_conf 9999999998614--7878569999-7993649146641--87-56338998999999999971664--33102789999
Q ss_pred HHHHCCCHHHHHH
Q ss_conf 4120379899999
Q gi|254780545|r 347 RGTPGFSGADLRN 359 (647)
Q Consensus 347 ~~t~g~sgAdi~~ 359 (647)
T Consensus 209 ~~A~GspG~a~~~ 221 (314)
T PRK07399 209 ALAQGSPGAAIAN 221 (314)
T ss_pred HHHCCCHHHHHHH
T ss_conf 8817997999999