HHsearch alignment for GI: 254780545 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.99  E-value=3.8e-08  Score=77.91  Aligned_cols=202  Identities=18%  Similarity=0.208  Sum_probs=120.9

Q ss_pred             CCHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH
Q ss_conf             4225698898-5-28899999999987433567664201233311003787425888999974246---99702058578
Q gi|254780545|r  142 VGSVTFKDVA-G-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD  216 (647)
Q Consensus       142 ~~~v~f~dv~-g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~  216 (647)
T Consensus        16 ~~~~tfdnFi~g~n~~~~~al~~~~---~------~---~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~   83 (235)
T PRK08084         16 PDDETFASFYPGDNDSLLAALQNVL---R------Q---EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK   83 (235)
T ss_pred             CCCCCHHCCCCCCCHHHHHHHHHHH---H------C---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf             9976630234488699999999998---5------7---89876999899998889999999999970798579987798


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             8644420332459999999987378012063235641445578988626889----889989985303235778299996
Q gi|254780545|r  217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDERE----QTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~----~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
T Consensus        84 ~~~--------~~~~~l~~l~--~~dll~iDDi~~i~g~~---------~~ee~lF~l~N~~~------~~g~~~ll~ts  138 (235)
T PRK08084         84 RAW--------FVPEVLEGME--QLSLVCIDNIECIAGDE---------LWEMAIFDLYNRIL------ESGKTRLLITG  138 (235)
T ss_pred             HHH--------HHHHHHHHHH--HCCEEEEECHHHHCCCH---------HHHHHHHHHHHHHH------HHCCCEEEEEC
T ss_conf             665--------1799998764--18989982745546997---------89999999999999------84896699967


Q ss_pred             CCCCCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             29810088---3331656423--141000134788999999985--4887773211024544120379899999999987
Q gi|254780545|r  293 TNRPDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA  365 (647)
Q Consensus       293 Tn~~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa  365 (647)
T Consensus       139 ~~~P~~l~~~l~DL~S--Rl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V-~~yl~~~~~-R~~~~L~~~l~~Ld  214 (235)
T PRK08084        139 DRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLD-REMRTLFMTLDQLD  214 (235)
T ss_pred             CCCHHHCCCCCHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf             9882430231288999--9956972785599989999999999997399999899-999998615-88999999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHH
Q ss_conf             64553202421045689997
Q gi|254780545|r  366 LMAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       366 ~~a~r~~~~~i~~~dl~~A~  385 (647)
T Consensus       215 ~~S-l~~kr~iTip~vkevL  233 (235)
T PRK08084        215 KAS-ITAQRKLTIPFVKEIL  233 (235)
T ss_pred             HHH-HHCCCCCCHHHHHHHH
T ss_conf             999-9819999999999996