HHsearch alignment for GI: 254780545 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.99 E-value=3.8e-08 Score=77.91 Aligned_cols=202 Identities=18% Similarity=0.208 Sum_probs=120.9
Q ss_pred CCHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHH
Q ss_conf 4225698898-5-28899999999987433567664201233311003787425888999974246---99702058578
Q gi|254780545|r 142 VGSVTFKDVA-G-VDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSD 216 (647)
Q Consensus 142 ~~~v~f~dv~-g-~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~ 216 (647)
T Consensus 16 ~~~~tfdnFi~g~n~~~~~al~~~~---~------~---~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNVL---R------Q---EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK 83 (235)
T ss_pred CCCCCHHCCCCCCCHHHHHHHHHHH---H------C---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 9976630234488699999999998---5------7---89876999899998889999999999970798579987798
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 8644420332459999999987378012063235641445578988626889----889989985303235778299996
Q gi|254780545|r 217 FVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDERE----QTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 217 ~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~----~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
T Consensus 84 ~~~--------~~~~~l~~l~--~~dll~iDDi~~i~g~~---------~~ee~lF~l~N~~~------~~g~~~ll~ts 138 (235)
T PRK08084 84 RAW--------FVPEVLEGME--QLSLVCIDNIECIAGDE---------LWEMAIFDLYNRIL------ESGKTRLLITG 138 (235)
T ss_pred HHH--------HHHHHHHHHH--HCCEEEEECHHHHCCCH---------HHHHHHHHHHHHHH------HHCCCEEEEEC
T ss_conf 665--------1799998764--18989982745546997---------89999999999999------84896699967
Q ss_pred CCCCCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 29810088---3331656423--141000134788999999985--4887773211024544120379899999999987
Q gi|254780545|r 293 TNRPDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAA 365 (647)
Q Consensus 293 Tn~~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa 365 (647)
T Consensus 139 ~~~P~~l~~~l~DL~S--Rl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V-~~yl~~~~~-R~~~~L~~~l~~Ld 214 (235)
T PRK08084 139 DRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLD-REMRTLFMTLDQLD 214 (235)
T ss_pred CCCHHHCCCCCHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 9882430231288999--9956972785599989999999999997399999899-999998615-88999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHH
Q ss_conf 64553202421045689997
Q gi|254780545|r 366 LMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 366 ~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 215 ~~S-l~~kr~iTip~vkevL 233 (235)
T PRK08084 215 KAS-ITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHH-HHCCCCCCHHHHHHHH
T ss_conf 999-9819999999999996