HHsearch alignment for GI: 254780545 and conserved domain: PRK08116

>PRK08116 hypothetical protein; Validated.
Probab=98.72  E-value=4.2e-08  Score=77.63  Aligned_cols=115  Identities=23%  Similarity=0.407  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHH----HCCHHHHHHHHHH
Q ss_conf             9987433567664201233311003787425888999974246---99702058578864442----0332459999999
Q gi|254780545|r  163 IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFV----GVGASRVRDMFEQ  235 (647)
Q Consensus       163 ~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~----g~g~~~vr~lf~~  235 (647)
T Consensus        94 a~~Y~~~---f~~~~-~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~~~~~~e~l~~  169 (262)
T PRK08116         94 AVKYVKK---FEEMK-KESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEGKEDENEIIRA  169 (262)
T ss_pred             HHHHHHH---HHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999998---98736-4686189989899989999999999999879939998899999999999863561019999998


Q ss_pred             HHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             9873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r  236 AKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP  296 (647)
Q Consensus       236 a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~  296 (647)
T Consensus       170 l-~~~-dLLIiDDlG---~e~~t------~w---~~e~lf~IIn~R-y~~~kptIiTTNl~  215 (262)
T PRK08116        170 L-DNA-DLLILDDLG---AEKDT------EW---VREKLYNIIDSR-YRKGLPTIFTTNLS  215 (262)
T ss_pred             H-HCC-CEEEEEHHC---CCCCC------HH---HHHHHHHHHHHH-HHCCCCEEEECCCC
T ss_conf             6-129-989983221---45698------78---999999999999-97699989987999