HHsearch alignment for GI: 254780545 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=97.54 E-value=0.00023 Score=50.52 Aligned_cols=132 Identities=24% Similarity=0.387 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH----HHHHH------------------
Q ss_conf 43356766420123331--1003787425888999974246---997020585----78864------------------
Q gi|254780545|r 167 LCDPQKFKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG----SDFVE------------------ 219 (647)
Q Consensus 167 l~~~~~~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~----s~~~~------------------ 219 (647)
T Consensus 8 ~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l 87 (230)
T PRK08533 8 LDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKL 87 (230)
T ss_pred CCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCE
T ss_conf 57135788717898898489998689987899999999999878986999994389999999999869981799757967
Q ss_pred ----HHHH-CCHH----HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf ----4420-3324----599999999873780120632356414455789886268898899899853032357782999
Q gi|254780545|r 220 ----LFVG-VGAS----RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILI 290 (647)
Q Consensus 220 ----~~~g-~g~~----~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi 290 (647)
T Consensus 88 ~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~---------~~~~~~~~~~~~lk~l~s~gktIil 158 (230)
T PRK08533 88 LYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRD---------ASEVQIRDLMAFFKRISSLNKVIIL 158 (230)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC---------CCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9996134335404578999999732664379899990531885167---------7789999999999999858988999
Q ss_pred EECCCCCCCCHHHCCCCCC
Q ss_conf 9629810088333165642
Q gi|254780545|r 291 AATNRPDVLDAALLRPGRF 309 (647)
Q Consensus 291 ~aTn~~~~lD~al~RpgRf 309 (647)
T Consensus 159 --Tv~p~~~~e~~l~~lrs 175 (230)
T PRK08533 159 --TANPKELPESVLLILRT 175 (230)
T ss_pred --EECCCCCCHHHHHHHHE
T ss_conf --95633136245442041