HHsearch alignment for GI: 254780545 and conserved domain: PRK08727

Probab=98.90  E-value=1.6e-07  Score=73.46  Aligned_cols=201  Identities=24%  Similarity=0.274  Sum_probs=120.2

Q ss_pred             CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHH
Q ss_conf             422569889-8528899999999987433567664201233311003787425888999974246---997020585788
Q gi|254780545|r  142 VGSVTFKDV-AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDF  217 (647)
Q Consensus       142 ~~~v~f~dv-~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~  217 (647)
T Consensus        13 ~~~~tfdnFi~~~n~~~a~l~~~---~~--------~-~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~   80 (233)
T PRK08727         13 PSDQRFDSYIAAPDGLLAQLQAL---AA--------G-QSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAA   80 (233)
T ss_pred             CCCCCHHHCCCCCHHHHHHHHHH---HC--------C-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf             97224212067855999999987---43--------8-888989998999998899999999999827997288447885


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             644420332459999999987378012063235641445578988626889----8899899853032357782999962
Q gi|254780545|r  218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDERE----QTLNQLLVEMDGFESSEGVILIAAT  293 (647)
Q Consensus       218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~----~~ln~ll~~mdg~~~~~~v~vi~aT  293 (647)
T Consensus        81 ~~--------~~~~~l~~l-e~-~~ll~iDDid~i~g~~---------~~e~aLFhL~N~~~-------~~~~~ll~ts~  134 (233)
T PRK08727         81 AG--------RLRDALEAL-EG-RSLVALDGVDSIAGQR---------EDEVALFDFHNRAR-------AAGITLLYTAR  134 (233)
T ss_pred             HH--------HHHHHHHHH-CC-CCEEEEECCHHCCCCH---------HHHHHHHHHHHHHH-------HCCCEEEEECC
T ss_conf             32--------025677531-03-8978985501126982---------79999999999998-------61983899779


Q ss_pred             CCCCCCCH---HHCCCCCC--CCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             98100883---33165642--3141000134788999999985--48877732110245441203798999999999876
Q gi|254780545|r  294 NRPDVLDA---ALLRPGRF--DRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAAL  366 (647)
Q Consensus       294 n~~~~lD~---al~RpgRf--d~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~  366 (647)
T Consensus       135 ~~P~~l~~~l~DL~S--RL~~~~~~~l~~~dD~~~~~iL~~~a~~rgl~l~~~V-~~Yll~r~~-R~~~~l~~~l~~LD~  210 (233)
T PRK08727        135 QMPDGLALVLPDLRS--RLSQCIRIGLPVLDDVARAAVLRDRAQRRGLALDEAA-IDWLLTHGE-RELAGLVALLDRLDR  210 (233)
T ss_pred             CCHHHHCCCHHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf             895662310021999--9966922885788979999999999998699999899-999998568-899999999999999


Q ss_pred             HHHHHHCCCCCHHHHHHHH
Q ss_conf             4553202421045689997
Q gi|254780545|r  367 MAARRNRRLVTMQEFEDAK  385 (647)
Q Consensus       367 ~a~r~~~~~i~~~dl~~A~  385 (647)
T Consensus       211 ~SL-~~kr~iTip~vk~vL  228 (233)
T PRK08727        211 ESL-AAKRRITVPFLRRVL  228 (233)
T ss_pred             HHH-HCCCCCCHHHHHHHH
T ss_conf             999-808988899999999