HHsearch alignment for GI: 254780545 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=98.71 E-value=2.6e-08 Score=79.16 Aligned_cols=138 Identities=25% Similarity=0.387 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHH
Q ss_conf 225698898528-899999999987433567664201233311003787425888999974246---9970205857886
Q gi|254780545|r 143 GSVTFKDVAGVD-EAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFV 218 (647)
Q Consensus 143 ~~v~f~dv~g~~-~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~ 218 (647)
T Consensus 123 ~~as~~d~~~~d~~R~~a~~~a~~F~~~---y~~--~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~ 197 (306)
T PRK08939 123 LQATLADIDLDDLDRLDALMAALDFLEA---YKP--GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFI 197 (306)
T ss_pred HCCCHHHCCCCCHHHHHHHHHHHHHHHH---HCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 8098986488977899999999999997---376--98887788989999989999999999999869929998759999
Q ss_pred HHHHH-CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHH-HHCCCCCCCCEEEEEECCC
Q ss_conf 44420-3324599999999873780120632356414455789886268-8988998998-5303235778299996298
Q gi|254780545|r 219 ELFVG-VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDE-REQTLNQLLV-EMDGFESSEGVILIAATNR 295 (647)
Q Consensus 219 ~~~~g-~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e-~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~ 295 (647)
T Consensus 198 ~~lK~s~~d~s~~~~i~~~-k~~~-vLiLDDiGa---E~~------t~W~rd~vl~~IL~~Rm~-----~~lPTffTSN~ 261 (306)
T PRK08939 198 RELKNAISDGSVKEKIDAV-KEAP-VLMLDDIGA---EQM------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNF 261 (306)
T ss_pred HHHHHHHCCCCHHHHHHHH-HCCC-EEEEECCCC---CCC------CHHHHHHHHHHHHHHHHH-----CCCCEEEECCC
T ss_conf 9999986489889999998-4499-899844465---426------777899899999999997-----49997997799
Q ss_pred -CCCCCH
Q ss_conf -100883
Q gi|254780545|r 296 -PDVLDA 301 (647)
Q Consensus 296 -~~~lD~ 301 (647)
T Consensus 262 ~~~eLe~ 268 (306)
T PRK08939 262 DFDELEH 268 (306)
T ss_pred CHHHHHH
T ss_conf 9999999