HHsearch alignment for GI: 254780545 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.14 E-value=9.4e-10 Score=89.57 Aligned_cols=205 Identities=28% Similarity=0.393 Sum_probs=131.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCE-----
Q ss_conf 000011242256988985288999999999874335676642012333110037874258889999742469970-----
Q gi|254780545|r 135 AKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPF----- 209 (647)
Q Consensus 135 Ak~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f----- 209 (647)
T Consensus 14 ~~k~rp----~~f~~~~gq~~~~~~l~~~~~-----------~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~ 78 (600)
T PRK09111 14 ARKYRP----QTFDDLIGQEAMVRTLRNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVG 78 (600)
T ss_pred EECCCC----CCHHHHCCCHHHHHHHHHHHH-----------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 210179----877663385999999999997-----------29842047645789878999999999996698876668
Q ss_pred ---EC--CCH-----------HHHHHHHHHCCHH-----HHHHHHHHHHHHCCH-----HEEHHHHHHHHCCCCCCCCCC
Q ss_conf ---20--585-----------7886444203324-----599999999873780-----120632356414455789886
Q gi|254780545|r 210 ---FT--ISG-----------SDFVELFVGVGAS-----RVRDMFEQAKNNSPC-----IVFVDEIDAVGRHRGIGLGGG 263 (647)
Q Consensus 210 ---~~--~~~-----------s~~~~~~~g~g~~-----~vr~lf~~a~~~~p~-----iifiDeida~~~~r~~~~~~~ 263 (647)
T Consensus 79 ~~~~~~c~~c~~c~~i~~~~~~d~~e~---daas~~~v~~~r~~~~~~-~~~p~~~~~kv~iidevhml----------- 143 (600)
T PRK09111 79 GPTIDPCGVGEHCQAIMEGRHVDVIEM---DAASHTGVDDIREIIESV-RYRPVSARYKVYIIDEVHML----------- 143 (600)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCEEEE---ECCCCCCHHHHHHHHHHH-CCCCCCCCEEEEEEECCCCC-----------
T ss_conf 998898998865898866899875885---155457888999999860-53887775469996001105-----------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHH-HHHHHHHCCCCCCCCCC
Q ss_conf 26889889989985303235778299996298100883331-65642314100013478899-99999854887773211
Q gi|254780545|r 264 NDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGRE-HILMVHSRNVPLAPNVI 341 (647)
Q Consensus 264 ~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~-~i~~~~~~~~~~~~~~d 341 (647)
T Consensus 144 ---s~~afnallktle--epp~~~~fi~att~~~k~p~ti~src~~f~~~~-~~~~~~~~~l~~i~~--~e~~~~~~~-a 214 (600)
T PRK09111 144 ---STAAFNALLKTLE--EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRR-IEAEVLAAHLARIAE--KEGVEVEPD-A 214 (600)
T ss_pred ---CHHHHHHHHHHHH--CCCCCEEEEEECCCHHHCCHHHHHHHHEECCCC-CCHHHHHHHHHHHHH--HCCCCCCHH-H
T ss_conf ---7999999998762--598654999962853437589985441201057-999999999999998--607686677-9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 024544120379899999999987645532024210456899
Q gi|254780545|r 342 LKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFED 383 (647)
Q Consensus 342 ~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~ 383 (647)
T Consensus 215 l~~ia~~a~G-S~RDaLSlLDQai~----~~~~~i~~~~v~~ 251 (600)
T PRK09111 215 LALIARAAEG-SVRDGLSLLDQAIA----HGAGEVTAEQVRD 251 (600)
T ss_pred HHHHHHHCCC-CCCHHHHHHHHHHH----CCCCCCCHHHHHH
T ss_conf 9999997489-84218999999997----2798756999999