HHsearch alignment for GI: 254780545 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=98.57 E-value=2e-06 Score=65.42 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHC---CCCCCEECCCHHHHHH-----HH
Q ss_conf 985288999999999874335676642012333110037874258889999742---4699702058578864-----44
Q gi|254780545|r 150 VAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAG---EANVPFFTISGSDFVE-----LF 221 (647)
Q Consensus 150 v~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~---e~~~~f~~~~~s~~~~-----~~ 221 (647)
T Consensus 141 liG~S~am~~v~~~i~------~~----A~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseL 210 (441)
T PRK10365 141 MVGKSPAMQHLLSEIA------LV----APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESEL 210 (441)
T ss_pred CEECCHHHHHHHHHHH------HH----HCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 6668999999999999------98----4889948998999810999999999657877898079878989845558986
Q ss_pred HH------CCHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCC----CCCEE
Q ss_conf 20------3324-5999999998737801206323564144557898862688988998998530--3235----77829
Q gi|254780545|r 222 VG------VGAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFES----SEGVI 288 (647)
Q Consensus 222 ~g------~g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~----~~~v~ 288 (647)
T Consensus 211 FG~~~gaftga~~~~~g~~~~A---~gGTLfLdeI~~l~~~-----------~Q~kLl~~l~~~~~~~~g~~~~~~~d~R 276 (441)
T PRK10365 211 FGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPM-----------MQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred CCCCCCCCCCCCCCCCCCEEEC---CCCEECCCCCCCCCHH-----------HHHHHHHHHHHHHHCCCCCCCEEECCCE
T ss_conf 1775568789653468987788---9982550231529999-----------9999998777521000588734413637
Q ss_pred EEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHHH----HHHHHHCCC----CC-CCCCCHHHHHHHH-HC
Q ss_conf 99962981008833316564231-------41000134788999----999985488----77-7321102454412-03
Q gi|254780545|r 289 LIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGREH----ILMVHSRNV----PL-APNVILKTIARGT-PG 351 (647)
Q Consensus 289 vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~~----i~~~~~~~~----~~-~~~~d~~~la~~t-~g 351 (647)
T Consensus 277 iIaat~~~l---~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 353 (441)
T PRK10365 277 LIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred EEECCCCCH---HHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 998378899---99988198258999886011137826000620099999999999999849998888999999997099
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 798--9999999998764553202421045689997
Q gi|254780545|r 352 FSG--ADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 352 ~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 354 WPGNvREL~n~iera~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 354 WPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CCCHHHHHHHHHHHHHHHC---CCCCCCHHHCCHHH
T ss_conf 9989999999999999957---89868846575433