HHsearch alignment for GI: 254780545 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=98.68 E-value=5.2e-08 Score=76.94 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH--
Q ss_conf 22569889852889999999998743356766420123331100378742588899997424---6997020585788--
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF-- 217 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~-- 217 (647)
T Consensus 199 ~~~~F~~iig~S~~m~~v~~---~a---~r~----A~~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~ 268 (513)
T PRK10820 199 DVSAFSQIVAVSPKMKHVVE---QA---RKL----AMLSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPE 268 (513)
T ss_pred CCCCHHHHEECCHHHHHHHH---HH---HHH----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCH
T ss_conf 41687775108999999999---99---998----598998899898982499999999966887899826888998996
Q ss_pred ---HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCC----CCEE
Q ss_conf ---64442033245999999998737801206323564144557898862688988998998530--32357----7829
Q gi|254780545|r 218 ---VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFESS----EGVI 288 (647)
Q Consensus 218 ---~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~~~----~~v~ 288 (647)
T Consensus 269 ~l~eseLFG~a~~~~~G~fe~A---~gGTLfLdEI~~l~~~-----------~Q~kLLr~Lq~~~~~rvG~~~~~~~dvR 334 (513)
T PRK10820 269 DAVESELFGHAPEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGEDHEVHVDVR 334 (513)
T ss_pred HHHHHHHCCCCCCCCCCCEEEC---CCCEEEEECHHHCCHH-----------HHHHHHHHHHCCEEEECCCCCEEEEEEE
T ss_conf 7899986387666889755785---8988999783659999-----------9999999986897996599853567789
Q ss_pred EEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH---HHHHHCC------CCCCCCCCHHHHHHH-HH
Q ss_conf 99962981008833316564231-------4100013478899-99---9998548------877732110245441-20
Q gi|254780545|r 289 LIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI---LMVHSRN------VPLAPNVILKTIARG-TP 350 (647)
Q Consensus 289 vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i---~~~~~~~------~~~~~~~d~~~la~~-t~ 350 (647)
T Consensus 335 iIaaT~~dL---~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~-~~ls~~a~~~L~~y 410 (513)
T PRK10820 335 VICATQKNL---VELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPR-PKLSADLSTVLTRY 410 (513)
T ss_pred EEECCCHHH---HHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHC
T ss_conf 996265309---99987298508899986167255888344655699999999999999759998-98479999999708
Q ss_pred CCCH--HHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 3798--999999999876455320242104568
Q gi|254780545|r 351 GFSG--ADLRNLVNEAALMAARRNRRLVTMQEF 381 (647)
Q Consensus 351 g~sg--Adi~~~~~eAa~~a~r~~~~~i~~~dl 381 (647)
T Consensus 411 ~WPGNVREL~n~iera~~~~---~g~~i~~~di 440 (513)
T PRK10820 411 GWPGNVRQLKNAIYRALTQL---EGYELRPQDI 440 (513)
T ss_pred CCCCHHHHHHHHHHHHHHHC---CCCCCCHHHC
T ss_conf 99979999999999999957---9985349982