HHsearch alignment for GI: 254780545 and conserved domain: PRK11034

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.36  E-value=4.9e-12  Score=106.08  Aligned_cols=220  Identities=23%  Similarity=0.398  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCC-------EECCCHHH
Q ss_conf             9889852889999999998743356766420123331100378742588899997424---6997-------02058578
Q gi|254780545|r  147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP-------FFTISGSD  216 (647)
Q Consensus       147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~-------f~~~~~s~  216 (647)
T Consensus       185 lDPviGR~~---Ei~r~i~iL~R---------r~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~  252 (758)
T PRK11034        185 IDPLIGREK---ELERAIQVLCR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS  252 (758)
T ss_pred             CCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
T ss_conf             998738489---99999999976---------325896021699986999999999999738997655898899845877


Q ss_pred             HH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             86--4442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r  217 FV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN  294 (647)
Q Consensus       217 ~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn  294 (647)
T Consensus       253 LiAGtkyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG-~~~gg~~Daa-NlLKP~L-------arG~l~~IgaTT  323 (758)
T PRK11034        253 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG-AASGGQVDAA-NLIKPLL-------SSGKIRVIGSTT  323 (758)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCC-CCCCCCCCHH-HHHHHHH-------HCCCCEEEEECC
T ss_conf             861686415499999999999985798599980434422688-7677764678-8745787-------469723999437


Q ss_pred             CCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHH----C-CCHHHHH
Q ss_conf             810-----08833316564231410001347889999999854------887773211024544120----3-7989999
Q gi|254780545|r  295 RPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR------NVPLAPNVILKTIARGTP----G-FSGADLR  358 (647)
Q Consensus       295 ~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~------~~~~~~~~d~~~la~~t~----g-~sgAdi~  358 (647)
T Consensus       324 ~~EYrk~iekD~AL~R--RFq-~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~-al~~av~Ls~rYi~dr~lPDKAI  399 (758)
T PRK11034        324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPDKAI  399 (758)
T ss_pred             HHHHHHCCCCCHHHHH--CCC-EEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCH-HHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             7998750321478884--282-6531899989999999989998732369577438-99999999976502688961999


Q ss_pred             HHHHHHHHHH----HHHHCCCCCHHHHHHHHHHCCCCC
Q ss_conf             9999987645----532024210456899975013686
Q gi|254780545|r  359 NLVNEAALMA----ARRNRRLVTMQEFEDAKDKILMGA  392 (647)
Q Consensus       359 ~~~~eAa~~a----~r~~~~~i~~~dl~~A~~rv~~G~  392 (647)
T Consensus       400 dllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~-t~i  436 (758)
T PRK11034        400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARI-ARI  436 (758)
T ss_pred             HHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHH-HCC
T ss_conf             9999998887513456631658999999999875-036