HHsearch alignment for GI: 254780545 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.36 E-value=4.9e-12 Score=106.08 Aligned_cols=220 Identities=23% Similarity=0.398 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCC-------EECCCHHH
Q ss_conf 9889852889999999998743356766420123331100378742588899997424---6997-------02058578
Q gi|254780545|r 147 FKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP-------FFTISGSD 216 (647)
Q Consensus 147 f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~-------f~~~~~s~ 216 (647)
T Consensus 185 lDPviGR~~---Ei~r~i~iL~R---------r~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~ 252 (758)
T PRK11034 185 IDPLIGREK---ELERAIQVLCR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_pred CCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHH
T ss_conf 998738489---99999999976---------325896021699986999999999999738997655898899845877
Q ss_pred HH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 86--4442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 217 FV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 217 ~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
T Consensus 253 LiAGtkyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG-~~~gg~~Daa-NlLKP~L-------arG~l~~IgaTT 323 (758)
T PRK11034 253 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG-AASGGQVDAA-NLIKPLL-------SSGKIRVIGSTT 323 (758)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCC-CCCCCCCCHH-HHHHHHH-------HCCCCEEEEECC
T ss_conf 861686415499999999999985798599980434422688-7677764678-8745787-------469723999437
Q ss_pred CCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHH----C-CCHHHHH
Q ss_conf 810-----08833316564231410001347889999999854------887773211024544120----3-7989999
Q gi|254780545|r 295 RPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR------NVPLAPNVILKTIARGTP----G-FSGADLR 358 (647)
Q Consensus 295 ~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~------~~~~~~~~d~~~la~~t~----g-~sgAdi~ 358 (647)
T Consensus 324 ~~EYrk~iekD~AL~R--RFq-~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~-al~~av~Ls~rYi~dr~lPDKAI 399 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred HHHHHHCCCCCHHHHH--CCC-EEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCH-HHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 7998750321478884--282-6531899989999999989998732369577438-99999999976502688961999
Q ss_pred HHHHHHHHHH----HHHHCCCCCHHHHHHHHHHCCCCC
Q ss_conf 9999987645----532024210456899975013686
Q gi|254780545|r 359 NLVNEAALMA----ARRNRRLVTMQEFEDAKDKILMGA 392 (647)
Q Consensus 359 ~~~~eAa~~a----~r~~~~~i~~~dl~~A~~rv~~G~ 392 (647)
T Consensus 400 dllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~-t~i 436 (758)
T PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARI-ARI 436 (758)
T ss_pred HHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHH-HCC
T ss_conf 9999998887513456631658999999999875-036