HHsearch alignment for GI: 254780545 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=98.56 E-value=4.8e-07 Score=69.97 Aligned_cols=147 Identities=27% Similarity=0.396 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCHHHHHH-----
Q ss_conf 88985288999999999874335676642012333110037874258889999742469---9702058578864-----
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISGSDFVE----- 219 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~s~~~~----- 219 (647)
T Consensus 6 ~~liG~S~~m~~v~~~~------~~~----A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~ 75 (325)
T PRK11608 6 DNLLGEANSFLEVLEQV------SHL----APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (325)
T ss_pred CCCEECCHHHHHHHHHH------HHH----HCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 99858999999999999------999----68899989889898379999999996588679997788779899778899
Q ss_pred HHHHC------CHH-HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC--CCC---C----
Q ss_conf 44203------324-5999999998737801206323564144557898862688988998998530--323---5----
Q gi|254780545|r 220 LFVGV------GAS-RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD--GFE---S---- 283 (647)
Q Consensus 220 ~~~g~------g~~-~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md--g~~---~---- 283 (647)
T Consensus 76 ~LFG~~~g~~~~~~~~~~g~le~a---~gGTL~L~eI~~l~~~--------------~Q~~Ll~~l~~~~~~r~g~~~~~ 138 (325)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQPL 138 (325)
T ss_pred HHCCCCCCCCCCCCCCCCCHHHCC---CCCEEEEECHHHCCHH--------------HHHHHHHHHHCCCEEECCCCCCC
T ss_conf 872775567677532468734356---8986997374547999--------------99999999864908857998766
Q ss_pred CCCEEEEEECCCCCCCCHHHCCCCCCCCE-------EEECHHHHHHHH
Q ss_conf 77829999629810088333165642314-------100013478899
Q gi|254780545|r 284 SEGVILIAATNRPDVLDAALLRPGRFDRQ-------ITVPNPDIVGRE 324 (647)
Q Consensus 284 ~~~v~vi~aTn~~~~lD~al~RpgRfd~~-------i~~~~P~~~~r~ 324 (647)
T Consensus 139 ~~~~RiIa~t~~~l---~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~ 183 (325)
T PRK11608 139 QVNVRLVCATNADL---PAMVNEGTFRADLLDRLAFDVVQLPPLRERQ 183 (325)
T ss_pred CCCEEEEECCCHHH---HHHHHHCCCHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 56468871332208---9999839567999856530111586845471