HHsearch alignment for GI: 254780545 and conserved domain: PRK11889

Probab=96.19  E-value=0.019  Score=36.65  Aligned_cols=145  Identities=16%  Similarity=0.291  Sum_probs=72.6

Q ss_pred             CCCCEEECCCCCHHHHHH-HHHH---HCCC-CCCEECCCH-----HHHHHHH---HH------CCHHHHHHHHHHHHHHC
Q ss_conf             333110037874258889-9997---4246-997020585-----7886444---20------33245999999998737
Q gi|254780545|r  180 IPHGVLLVGPPGTGKTLL-ARAV---AGEA-NVPFFTISG-----SDFVELF---VG------VGASRVRDMFEQAKNNS  240 (647)
Q Consensus       180 ~p~g~ll~GppGtGKTll-a~a~---a~e~-~~~f~~~~~-----s~~~~~~---~g------~g~~~vr~lf~~a~~~~  240 (647)
T Consensus       240 ~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             HCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCC
T ss_conf             17179998999988899999999998616980899980663476999999999984994399688899999999876336


Q ss_pred             CH-HEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCC--CCCEEEECH
Q ss_conf             80-120632356414455789886268898899899853032357782999962981008833316564--231410001
Q gi|254780545|r  241 PC-IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGR--FDRQITVPN  317 (647)
Q Consensus       241 p~-iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgR--fd~~i~~~~  317 (647)
T Consensus       320 ~~DLILIDT---AGR------S-~RD~--~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~l~idglIfTKL  387 (436)
T PRK11889        320 RVDYILIDT---AGK------N-YRAS--ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKF  387 (436)
T ss_pred             CCCEEEEEC---CCC------C-CCCH--HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             888899929---898------8-4689--999999999851277716999978899899999999725799882899713


Q ss_pred             HHHHHHHHHHHHHH-CCCCC
Q ss_conf             34788999999985-48877
Q gi|254780545|r  318 PDIVGREHILMVHS-RNVPL  336 (647)
Q Consensus       318 P~~~~r~~i~~~~~-~~~~~  336 (647)
T Consensus       388 DET~SlG~ILNv~~~s~LPI  407 (436)
T PRK11889        388 DETASSGELLKIPAVSSAPI  407 (436)
T ss_pred             CCCCCCHHHHHHHHHHCCCE
T ss_conf             25687037888998839987