HHsearch alignment for GI: 254780545 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.53  E-value=1.4e-13  Score=117.29  Aligned_cols=183  Identities=25%  Similarity=0.345  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHHHH
Q ss_conf             569889852889999999998743356766420123331100378742588899997424699-----702058578864
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDFVE  219 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~~~  219 (647)
T Consensus        12 ~~~~dvvGq~~i~~~L~~~~~---~--------~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~   79 (337)
T PRK12402         12 SLFEDILGQESVVDHLSALAA---S--------GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFD   79 (337)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
T ss_conf             979980397999999999997---7--------99876-98889298489999999999967997567833311653113


Q ss_pred             --------------HHHHCCH--HHHHHHHHH----HHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             --------------4420332--459999999----987378-----012063235641445578988626889889989
Q gi|254780545|r  220 --------------LFVGVGA--SRVRDMFEQ----AKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL  274 (647)
Q Consensus       220 --------------~~~g~g~--~~vr~lf~~----a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l  274 (647)
T Consensus        80 ~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~--------------~Aq~aL  145 (337)
T PRK12402         80 QGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALRE--------------DAQQAL  145 (337)
T ss_pred             CCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH--------------HHHHHH
T ss_conf             564001016642344201533277378999999999861488778804999707131799--------------999999


Q ss_pred             HHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCC
Q ss_conf             9853032357782999962981008833316564231410001347889999999854--88777321102454412037
Q gi|254780545|r  275 LVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGF  352 (647)
Q Consensus       275 l~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~  352 (647)
T Consensus       146 lk~lE--e~~~~~~fIl~t~~~~~ii~tI~S--RC-~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~-~l~~ia~~s~G-  218 (337)
T PRK12402        146 RRIME--RYSETCRFIFSTTQPSKLIPPIRS--RC-LPLFFRPVPDDEIRSVLESIAAAEGVEISDD-GLDLIAYYAEG-  218 (337)
T ss_pred             HHHHH--CCCCCEEEEEECCCCCCCCHHHHH--HC-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-
T ss_conf             98874--088766998723864447524776--24-4543589899999999999999849998999-99999998699-


Q ss_pred             CHHHHHHHHHH
Q ss_conf             98999999999
Q gi|254780545|r  353 SGADLRNLVNE  363 (647)
Q Consensus       353 sgAdi~~~~~e  363 (647)
T Consensus       219 ---dlR~ain~  226 (337)
T PRK12402        219 ---DLRKAILT  226 (337)
T ss_pred             ---CHHHHHHH
T ss_conf             ---89999999