HHsearch alignment for GI: 254780545 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.53 E-value=1.4e-13 Score=117.29 Aligned_cols=183 Identities=25% Similarity=0.345 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----CEECCCHHHHHH
Q ss_conf 569889852889999999998743356766420123331100378742588899997424699-----702058578864
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----PFFTISGSDFVE 219 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----~f~~~~~s~~~~ 219 (647)
T Consensus 12 ~~~~dvvGq~~i~~~L~~~~~---~--------~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~ 79 (337)
T PRK12402 12 SLFEDILGQESVVDHLSALAA---S--------GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFD 79 (337)
T ss_pred CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
T ss_conf 979980397999999999997---7--------99876-98889298489999999999967997567833311653113
Q ss_pred --------------HHHHCCH--HHHHHHHHH----HHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf --------------4420332--459999999----987378-----012063235641445578988626889889989
Q gi|254780545|r 220 --------------LFVGVGA--SRVRDMFEQ----AKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL 274 (647)
Q Consensus 220 --------------~~~g~g~--~~vr~lf~~----a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~l 274 (647)
T Consensus 80 ~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~--------------~Aq~aL 145 (337)
T PRK12402 80 QGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALRE--------------DAQQAL 145 (337)
T ss_pred CCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH--------------HHHHHH
T ss_conf 564001016642344201533277378999999999861488778804999707131799--------------999999
Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCC
Q ss_conf 9853032357782999962981008833316564231410001347889999999854--88777321102454412037
Q gi|254780545|r 275 LVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGF 352 (647)
Q Consensus 275 l~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~ 352 (647)
T Consensus 146 lk~lE--e~~~~~~fIl~t~~~~~ii~tI~S--RC-~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~-~l~~ia~~s~G- 218 (337)
T PRK12402 146 RRIME--RYSETCRFIFSTTQPSKLIPPIRS--RC-LPLFFRPVPDDEIRSVLESIAAAEGVEISDD-GLDLIAYYAEG- 218 (337)
T ss_pred HHHHH--CCCCCEEEEEECCCCCCCCHHHHH--HC-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-
T ss_conf 98874--088766998723864447524776--24-4543589899999999999999849998999-99999998699-
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999999
Q gi|254780545|r 353 SGADLRNLVNE 363 (647)
Q Consensus 353 sgAdi~~~~~e 363 (647)
T Consensus 219 ---dlR~ain~ 226 (337)
T PRK12402 219 ---DLRKAILT 226 (337)
T ss_pred ---CHHHHHHH
T ss_conf ---89999999