HHsearch alignment for GI: 254780545 and conserved domain: PRK12422
>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=99.01 E-value=2e-08 Score=79.89 Aligned_cols=224 Identities=19% Similarity=0.261 Sum_probs=129.1
Q ss_pred CCCHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC---CCEECCCH
Q ss_conf 242256988-9852889--99999999874335676642012333110037874258889999742469---97020585
Q gi|254780545|r 141 NVGSVTFKD-VAGVDEA--KEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN---VPFFTISG 214 (647)
Q Consensus 141 ~~~~v~f~d-v~g~~~~--k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~---~~f~~~~~ 214 (647)
T Consensus 104 lNp~ytFd~FVvG~~N~lA~~aa~~va---~~~~~~---~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvta 177 (455)
T PRK12422 104 VDPEMTFANFLVTPENDLPFRILQEFA---KVSEQG---KGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSS 177 (455)
T ss_pred CCCCCCCCCEEECCCCHHHHHHHHHHH---HCCCCC---CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 897783558331586099999999998---375535---88767875887899997899999999985379986999749
Q ss_pred HHHHHHHHHC-CHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 7886444203-324599999999873780120632356414455789886268898899899853032357782999962
Q gi|254780545|r 215 SDFVELFVGV-GASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT 293 (647)
Q Consensus 215 s~~~~~~~g~-g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT 293 (647)
T Consensus 178 e~F~~~~v~ai~~~~~-~~Fr~~yr~~-DvLLIDDIQfl~gK~~t-----qeEff~tfN~L~-------~~~KQIVitsD 243 (455)
T PRK12422 178 ELFTEHLVSAIRSGEM-QRFRSFYRNV-DALFIEDIEVFSGKGAT-----QEEFFHTFNSLH-------TEGKLIVISSS 243 (455)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHCC-CEEEEEHHHHHHCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECC
T ss_conf 9999999999975889-9999999638-87763147887284889-----999999999999-------85996999689
Q ss_pred CCCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98100---8833316564231--4100013478899999998548--877732110245441203798999999999876
Q gi|254780545|r 294 NRPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSRN--VPLAPNVILKTIARGTPGFSGADLRNLVNEAAL 366 (647)
Q Consensus 294 n~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~~--~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~ 366 (647)
T Consensus 244 r~P~el~~l~~RL~S--Rf~~GL~v~I~~Pd~etr~~Il~~k~~~~~~~l~~ev-~~~iA~~i~-~niReLeGal~~l~~ 319 (455)
T PRK12422 244 YAPGDLKAMEERLIS--RFEWGIAIPIHPLTREGLRSFLMRQAEQLSIRIEETA-LDFLIQALS-SNVKTLLHALTLLAK 319 (455)
T ss_pred CCHHHHHHHHHHHHH--HHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 895765126899998--8637613216899989999999999987188884468-999999975-517999999999999
Q ss_pred HHH--HHHCCCCCHHHHHHHHHHC
Q ss_conf 455--3202421045689997501
Q gi|254780545|r 367 MAA--RRNRRLVTMQEFEDAKDKI 388 (647)
Q Consensus 367 ~a~--r~~~~~i~~~dl~~A~~rv 388 (647)
T Consensus 320 ~~~~~~~~~~~i~~~~~~~~l~d~ 343 (455)
T PRK12422 320 RVAYKKLSHQLLYEDDIKALLHDV 343 (455)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999871568836499999999987