HHsearch alignment for GI: 254780545 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.09 E-value=0.003 Score=42.55 Aligned_cols=153 Identities=19% Similarity=0.291 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHH-HHHHH----CC-CCCCEECCC-----HHHHHH---------HHHHCCHHH
Q ss_conf 35676642012333110037874258889-99974----24-699702058-----578864---------442033245
Q gi|254780545|r 169 DPQKFKRLGGRIPHGVLLVGPPGTGKTLL-ARAVA----GE-ANVPFFTIS-----GSDFVE---------LFVGVGASR 228 (647)
Q Consensus 169 ~~~~~~~~g~~~p~g~ll~GppGtGKTll-a~a~a----~e-~~~~f~~~~-----~s~~~~---------~~~g~g~~~ 228 (647)
T Consensus 211 ~~~~~~~~~~~~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~e 290 (432)
T PRK12724 211 DSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK 290 (432)
T ss_pred CCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHH
T ss_conf 74011035777762999989999888999999999999974992799952665377999999999985994599518999
Q ss_pred HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---CCEEEEEECCCCCCCCHHHCC
Q ss_conf 99999999873780120632356414455789886268898899899853032357---782999962981008833316
Q gi|254780545|r 229 VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESS---EGVILIAATNRPDVLDAALLR 305 (647)
Q Consensus 229 vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~---~~v~vi~aTn~~~~lD~al~R 305 (647)
T Consensus 291 l~~al~~--~~~-DlILIDT---AGr------S~rd~~~---~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~ 355 (432)
T PRK12724 291 FKETLAR--DGS-ELILIDT---AGY------SHRNLEQ---LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred HHHHHHH--CCC-CEEEEEC---CCC------CCCCHHH---HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 9999985--699-9999929---998------9789999---99999999863667885179999788998999999998
Q ss_pred CCCCC-CEEEECHHHHH-HHHHHHHHHHC-CCCC
Q ss_conf 56423-14100013478-89999999854-8877
Q gi|254780545|r 306 PGRFD-RQITVPNPDIV-GREHILMVHSR-NVPL 336 (647)
Q Consensus 306 pgRfd-~~i~~~~P~~~-~r~~i~~~~~~-~~~~ 336 (647)
T Consensus 356 f~~l~~~~lIfTKLDET~s~G~ilni~~~~~~Pi 389 (432)
T PRK12724 356 YESLNYRRILLTKLDEADFLGSFLELADTYSKSF 389 (432)
T ss_pred HCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCE
T ss_conf 4269998499971227798669999999988986