HHsearch alignment for GI: 254780545 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.68 E-value=3.1e-16 Score=136.46 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
T Consensus 25 ~~Lde~vGQ~hllg~g~~Lrr~i~~---------~~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~-------s 88 (726)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-------A 88 (726)
T ss_pred CCHHHHCCCHHHCCCCCHHHHHHHC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-------C
T ss_conf 9877735957542898289999976---------99982788897999999999999887488679985620-------3
Q ss_pred CHHHHHHHHHHHHHH-----CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCC
Q ss_conf 324599999999873-----780120632356414455789886268898899899853032357782999962--9810
Q gi|254780545|r 225 GASRVRDMFEQAKNN-----SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRPD 297 (647)
Q Consensus 225 g~~~vr~lf~~a~~~-----~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~~ 297 (647)
T Consensus 89 gvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~Q--------------QD~LLp~v----E~G~i~LIGATTENP~F 150 (726)
T PRK13341 89 GVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQ--------------QDALLPWV----ENGTVTLIGATTENPYF 150 (726)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHH--------------HHHHHHHH----CCCEEEEEEECCCCCCE
T ss_conf 7799999999999998745996599986254258878--------------99878886----06838999704789743
Q ss_pred CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC---------CCCCCCCHHHHHHHHHCCCHHHHHHHHH--HHHH
Q ss_conf 0883331656423141000134788999999985488---------7773211024544120379899999999--9876
Q gi|254780545|r 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV---------PLAPNVILKTIARGTPGFSGADLRNLVN--EAAL 366 (647)
Q Consensus 298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~---------~~~~~~d~~~la~~t~g~sgAdi~~~~~--eAa~ 366 (647)
T Consensus 151 ~vn~ALlS--R~-~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~-al~~l~~----~s~GDaR~aLN~LElav 222 (726)
T PRK13341 151 EVNKALVS--RS-RLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPE-AEKHLVD----VANGDARSLLNALELAV 222 (726)
T ss_pred EECHHHHH--HC-EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHH----HCCCCHHHHHHHHHHHH
T ss_conf 64298883--23-46674389999999999999876743256678775989-9999999----75973999999999999
Q ss_pred HHHHHH---CCCCCHHHHHHHHHH
Q ss_conf 455320---242104568999750
Q gi|254780545|r 367 MAARRN---RRLVTMQEFEDAKDK 387 (647)
Q Consensus 367 ~a~r~~---~~~i~~~dl~~A~~r 387 (647)
T Consensus 223 ~~~~~~~~~~~~i~~~~~~~~~~~ 246 (726)
T PRK13341 223 ESTPPDEDGVIHINLAIAEESIQQ 246 (726)
T ss_pred HHCCCCCCCCEEECHHHHHHHHHH
T ss_conf 707457688344359999999856