HHsearch alignment for GI: 254780545 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.76 E-value=1.9e-17 Score=145.21 Aligned_cols=205 Identities=28% Similarity=0.425 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 569889852889999---99999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r 145 VTFKDVAGVDEAKED---LQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 145 v~f~dv~g~~~~k~~---~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
T Consensus 10 ~~lde~vGQ~hllg~~~~L~~~i~---~--------~~~~-s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~----- 72 (417)
T PRK13342 10 KTLDEVVGQEHLLGPGKPLRRMIE---A--------GRLS-SMILWGPPGTGKTTLARIIAGATDAEFEALSAVT----- 72 (417)
T ss_pred CCHHHHCCCHHHHCCCHHHHHHHH---C--------CCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-----
T ss_conf 988885798776089719999997---6--------9997-5998896999899999999998689889961410-----
Q ss_pred HHCCHHHHHHHHHHHHHH---CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCC
Q ss_conf 203324599999999873---780120632356414455789886268898899899853032357782999962--981
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNN---SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRP 296 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~---~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~ 296 (647)
T Consensus 73 --~gv~dir~ii~~a~~~~~~~~tilfiDEIHRfnK~--------------QQD~LLp~vE----~g~iiLIgATTENP~ 132 (417)
T PRK13342 73 --SGVKDLREVIEEAKQSRLGRRTILFIDEIHRFNKA--------------QQDALLPHVE----DGTITLIGATTENPS 132 (417)
T ss_pred --CCHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHH--------------HHHHHHHHHH----CCCEEEEEECCCCCH
T ss_conf --38899999999988631489659999782005889--------------9999987511----265699974157922
Q ss_pred CCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHH-HHHHCCCHHHHHHHHHHHHHH-HHHHHC
Q ss_conf 00883331656423141000134788999999985488-777321102454-412037989999999998764-553202
Q gi|254780545|r 297 DVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV-PLAPNVILKTIA-RGTPGFSGADLRNLVNEAALM-AARRNR 373 (647)
Q Consensus 297 ~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~-~~~~~~d~~~la-~~t~g~sgAdi~~~~~eAa~~-a~r~~~ 373 (647)
T Consensus 133 f~in~aLlS--Rc-~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~ 209 (417)
T PRK13342 133 FEVNPALLS--RA-QVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGG 209 (417)
T ss_pred HHCCHHHHH--HH-HHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 534898985--65-700205899999999999999877433788776999999999814985999999999998525899
Q ss_pred CCCCHHHHHHHHHHCC
Q ss_conf 4210456899975013
Q gi|254780545|r 374 RLVTMQEFEDAKDKIL 389 (647)
Q Consensus 374 ~~i~~~dl~~A~~rv~ 389 (647)
T Consensus 210 ~~i~~~~~~~~~~~~~ 225 (417)
T PRK13342 210 EVITLELLEEALQRRA 225 (417)
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7348999999984410