HHsearch alignment for GI: 254780545 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=98.03 E-value=8.4e-07 Score=68.20 Aligned_cols=128 Identities=30% Similarity=0.442 Sum_probs=77.1
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHH---HHHHHCCHHHHHH--HHHHHHH-HCC--HHEEH
Q ss_conf 201233311003787425888999974246-9970205857886---4442033245999--9999987-378--01206
Q gi|254780545|r 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFV---ELFVGVGASRVRD--MFEQAKN-NSP--CIVFV 246 (647)
Q Consensus 176 ~g~~~p~g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~---~~~~g~g~~~vr~--lf~~a~~-~~p--~iifi 246 (647)
T Consensus 34 LaalagehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPeElFGP~si~~Lk~~g~y~R~t~G~LP~A~iaFL 113 (498)
T PRK13531 34 LAALSGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFL 113 (498)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEEEEECCCCCCCCEEEHH
T ss_conf 99972894698889951388999999998557408999987469888853833299871178489722675886613157
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCC-C-----EEEEEECCC-CC---CCCHHHCCCCCCCCEEE
Q ss_conf 3235641445578988626889889989985303--23577-8-----299996298-10---08833316564231410
Q gi|254780545|r 247 DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESSE-G-----VILIAATNR-PD---VLDAALLRPGRFDRQIT 314 (647)
Q Consensus 247 Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~~-~-----v~vi~aTn~-~~---~lD~al~RpgRfd~~i~ 314 (647)
T Consensus 114 DEIfK----a-------n---sAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~~~L-~AlyD--RfL~R~~ 176 (498)
T PRK13531 114 DEIWK----A-------G---PAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEADSSL-EALYD--RMLIRLW 176 (498)
T ss_pred HHHHH----C-------C---HHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCCCCH-HHHHH--HHHHHEE
T ss_conf 87861----4-------8---89999999986464034798313044688643046799998407-88887--6441022
Q ss_pred ECHHHH
Q ss_conf 001347
Q gi|254780545|r 315 VPNPDI 320 (647)
Q Consensus 315 ~~~P~~ 320 (647)
T Consensus 177 v~~v~~ 182 (498)
T PRK13531 177 LDKVQD 182 (498)
T ss_pred CCCCCC
T ss_conf 313167