HHsearch alignment for GI: 254780545 and conserved domain: PRK13700
>PRK13700 conjugal transfer protein TraD; Provisional.
Probab=95.78 E-value=0.05 Score=33.68 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHCCCC-----CCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
Q ss_conf 664201233-----31100378742588899997424----699702058578864442033245999999998737801
Q gi|254780545|r 173 FKRLGGRIP-----HGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI 243 (647)
Q Consensus 173 ~~~~g~~~p-----~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~i 243 (647)
T Consensus 172 i~i~glpl~k~sE~qH~li~GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~G~Fv~~FY~p~~DiILNPf---DaRc~~W 248 (732)
T PRK13700 172 IRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNPL---DARCAAW 248 (732)
T ss_pred CEECCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCEEECCH---HHCCCCC
T ss_conf 2467866676520312677468888899999999999997299589993998533976398888654820---1058987
Q ss_pred EEHHHH
Q ss_conf 206323
Q gi|254780545|r 244 VFVDEI 249 (647)
Q Consensus 244 ifiDei 249 (647)
T Consensus 249 s~w~E~ 254 (732)
T PRK13700 249 DLWKEC 254 (732)
T ss_pred CHHHHH
T ss_conf 557660