HHsearch alignment for GI: 254780545 and conserved domain: PRK13700

>PRK13700 conjugal transfer protein TraD; Provisional.
Probab=95.78  E-value=0.05  Score=33.68  Aligned_cols=74  Identities=15%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             HHHHHCCCC-----CCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHH
Q ss_conf             664201233-----31100378742588899997424----699702058578864442033245999999998737801
Q gi|254780545|r  173 FKRLGGRIP-----HGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCI  243 (647)
Q Consensus       173 ~~~~g~~~p-----~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~i  243 (647)
T Consensus       172 i~i~glpl~k~sE~qH~li~GTtGtGKS~~ir~LL~qIR~RGdrAIIyD~~G~Fv~~FY~p~~DiILNPf---DaRc~~W  248 (732)
T PRK13700        172 IRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNPL---DARCAAW  248 (732)
T ss_pred             CEECCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCEEECCH---HHCCCCC
T ss_conf             2467866676520312677468888899999999999997299589993998533976398888654820---1058987


Q ss_pred             EEHHHH
Q ss_conf             206323
Q gi|254780545|r  244 VFVDEI  249 (647)
Q Consensus       244 ifiDei  249 (647)
T Consensus       249 s~w~E~  254 (732)
T PRK13700        249 DLWKEC  254 (732)
T ss_pred             CHHHHH
T ss_conf             557660