HHsearch alignment for GI: 254780545 and conserved domain: PRK13851

>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.16  E-value=0.017  Score=36.97  Aligned_cols=79  Identities=22%  Similarity=0.360  Sum_probs=50.1

Q ss_pred             HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHH-----HCCHHHHHHHHHH
Q ss_conf             676642012333110037874258889999742469----------9702058578864442-----0332459999999
Q gi|254780545|r  171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFV-----GVGASRVRDMFEQ  235 (647)
Q Consensus       171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~-----g~g~~~vr~lf~~  235 (647)
T Consensus       152 ~~fL~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~l~~~~~~~g~~~vt~~~Ll~~  231 (343)
T PRK13851        152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA  231 (343)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             99999999769889998889861999999999628965527996115002589999689996589888583979999999


Q ss_pred             HHHHCCHHEEHHHH
Q ss_conf             98737801206323
Q gi|254780545|r  236 AKNNSPCIVFVDEI  249 (647)
Q Consensus       236 a~~~~p~iifiDei  249 (647)
T Consensus       232 aLRmrPDRIivGEv  245 (343)
T PRK13851        232 SLRMRPDRILLGEM  245 (343)
T ss_pred             HHCCCCCEEEEEEE
T ss_conf             86079982899852