HHsearch alignment for GI: 254780545 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.16 E-value=0.017 Score=36.97 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=50.1
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC----------CCEECCCHHHHHHHHH-----HCCHHHHHHHHHH
Q ss_conf 676642012333110037874258889999742469----------9702058578864442-----0332459999999
Q gi|254780545|r 171 QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN----------VPFFTISGSDFVELFV-----GVGASRVRDMFEQ 235 (647)
Q Consensus 171 ~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~----------~~f~~~~~s~~~~~~~-----g~g~~~vr~lf~~ 235 (647)
T Consensus 152 ~~fL~~aV~~r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~~~n~V~l~~~~~~~g~~~vt~~~Ll~~ 231 (343)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQA 231 (343)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 99999999769889998889861999999999628965527996115002589999689996589888583979999999
Q ss_pred HHHHCCHHEEHHHH
Q ss_conf 98737801206323
Q gi|254780545|r 236 AKNNSPCIVFVDEI 249 (647)
Q Consensus 236 a~~~~p~iifiDei 249 (647)
T Consensus 232 aLRmrPDRIivGEv 245 (343)
T PRK13851 232 SLRMRPDRILLGEM 245 (343)
T ss_pred HHCCCCCEEEEEEE
T ss_conf 86079982899852