HHsearch alignment for GI: 254780545 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=99.08 E-value=1.1e-10 Score=96.19 Aligned_cols=173 Identities=24% Similarity=0.365 Sum_probs=111.8
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHHH-HHHHH------HHHHHHH----------HCCCC-CCEEECCCCCHHHHHHHH
Q ss_conf 11242256988-985288999999999-87433------5676642----------01233-311003787425888999
Q gi|254780545|r 139 SGNVGSVTFKD-VAGVDEAKEDLQEIV-DFLCD------PQKFKRL----------GGRIP-HGVLLVGPPGTGKTLLAR 199 (647)
Q Consensus 139 ~~~~~~v~f~d-v~g~~~~k~~~~~~v-~~l~~------~~~~~~~----------g~~~p-~g~ll~GppGtGKTlla~ 199 (647)
T Consensus 91 ~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAq 170 (452)
T TIGR00382 91 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQ 170 (452)
T ss_pred CCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf 82799997213612310105254324112466653243045558840002354444433300662454688852689999
Q ss_pred HHHCCCCCCEECCCHHHHHH-HHHHCCHHH-HHHHHHHHH----HHCCHHEEHHHHHHHHCCCCCCC----CCCCHHHHH
Q ss_conf 97424699702058578864-442033245-999999998----73780120632356414455789----886268898
Q gi|254780545|r 200 AVAGEANVPFFTISGSDFVE-LFVGVGASR-VRDMFEQAK----NNSPCIVFVDEIDAVGRHRGIGL----GGGNDEREQ 269 (647)
Q Consensus 200 a~a~e~~~~f~~~~~s~~~~-~~~g~g~~~-vr~lf~~a~----~~~p~iifiDeida~~~~r~~~~----~~~~~e~~~ 269 (647)
T Consensus 171 TLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSG--EG-- 246 (452)
T TIGR00382 171 TLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSENPSITRDVSG--EG-- 246 (452)
T ss_pred HHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCCCEEEEEECC--CH--
T ss_conf 99987388742111110200664242288999999874145524527850898422310121577801122175--54--
Q ss_pred HHHHHHHHHCCCCCC-------------------CCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHH
Q ss_conf 899899853032357-------------------7829999629810088333165642314100013
Q gi|254780545|r 270 TLNQLLVEMDGFESS-------------------EGVILIAATNRPDVLDAALLRPGRFDRQITVPNP 318 (647)
Q Consensus 270 ~ln~ll~~mdg~~~~-------------------~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P 318 (647)
T Consensus 247 VQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGA-F~GL~~iI~~--R~~~~~~iGF~ 311 (452)
T TIGR00382 247 VQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGA-FVGLEKIIKK--RTEKKSSIGFG 311 (452)
T ss_pred HHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCH-HHHHHHHHHH--HHCCCCCCCCC
T ss_conf 99999987603234317544886886576886476400110543-4448999988--74555333545