HHsearch alignment for GI: 254780545 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=100.00 E-value=0 Score=528.37 Aligned_cols=234 Identities=46% Similarity=0.792 Sum_probs=223.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHH
Q ss_conf 1124225698898528899999999987-433567664201233311003787425888999974246997020585788
Q gi|254780545|r 139 SGNVGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDF 217 (647)
Q Consensus 139 ~~~~~~v~f~dv~g~~~~k~~~~~~v~~-l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~ 217 (647)
T Consensus 532 ~~evP~v~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~ 611 (980)
T TIGR01243 532 LVEVPNVKWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 611 (980)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 02337511001466789999998775234440589986078899734874689861688888774014564677407312
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 64442033245999999998737801206323564144557898862688988998998530323577829999629810
Q gi|254780545|r 218 VELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPD 297 (647)
Q Consensus 218 ~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~ 297 (647)
T Consensus 612 lskWvGese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~-~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPd 690 (980)
T TIGR01243 612 LSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEK-GVTDRIVNQLLTELDGLEELSDVVVIAATNRPD 690 (980)
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 2344032479999999986412873787302111054124421001-026899999998640443436658986158874
Q ss_pred CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0883331656423141000134788999999985488777321102454412037989999999998764553202
Q gi|254780545|r 298 VLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNR 373 (647)
Q Consensus 298 ~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~ 373 (647)
T Consensus 691 i~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~~teGytGadi~a~~rea~~~~~r~~~ 766 (980)
T TIGR01243 691 ILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAKKTEGYTGADIEAVVREAALAALREVV 766 (980)
T ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 2361004887412168605985567676765531113530134389998651687632299999999999999973