HHsearch alignment for GI: 254780545 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.37 E-value=0.0024 Score=43.21 Aligned_cols=52 Identities=35% Similarity=0.731 Sum_probs=33.2
Q ss_pred HHCCCCCCEE--ECCCCCHHHHHHHHHHHCCC---C--CCEECCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 2012333110--03787425888999974246---9--97020585788644420332459999999
Q gi|254780545|r 176 LGGRIPHGVL--LVGPPGTGKTLLARAVAGEA---N--VPFFTISGSDFVELFVGVGASRVRDMFEQ 235 (647)
Q Consensus 176 ~g~~~p~g~l--l~GppGtGKTlla~a~a~e~---~--~~f~~~~~s~~~~~~~g~g~~~vr~lf~~ 235 (647)
T Consensus 5 LgGGvE~G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEG--------GLS~ER~~q~~~~ 63 (223)
T TIGR02237 5 LGGGVERGIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEG--------GLSPERFKQIAED 63 (223)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--------CCHHHHHHHHHHC
T ss_conf 0585120358898758998678999999999986189589996289--------8328999998630