HHsearch alignment for GI: 254780545 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.37  E-value=2.1e-12  Score=108.70  Aligned_cols=159  Identities=28%  Similarity=0.471  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH----HHHHHHCCCCCC-------EECCCH
Q ss_conf             698898528899999999987433567664201233311003787425888----999974246997-------020585
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTL----LARAVAGEANVP-------FFTISG  214 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTl----la~a~a~e~~~~-------f~~~~~  214 (647)
T Consensus       206 kiDPLIGRE~El---eRtiQvLCRR~KN---------NPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDm  273 (774)
T TIGR02639       206 KIDPLIGREDEL---ERTIQVLCRRKKN---------NPLLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDM  273 (774)
T ss_pred             CCCCCCCCHHHH---HHHHHHHCCCCCC---------CCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECH
T ss_conf             878734566887---4233320345678---------8720448886448999999998641564670024783454043


Q ss_pred             HHHH--HHHHHCCHHHHHHHHHHHHHHCCH-HEEHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             7886--444203324599999999873780-1206323564144557898862-68898899899853032357782999
Q gi|254780545|r  215 SDFV--ELFVGVGASRVRDMFEQAKNNSPC-IVFVDEIDAVGRHRGIGLGGGN-DEREQTLNQLLVEMDGFESSEGVILI  290 (647)
Q Consensus       215 s~~~--~~~~g~g~~~vr~lf~~a~~~~p~-iifiDeida~~~~r~~~~~~~~-~e~~~~ln~ll~~mdg~~~~~~v~vi  290 (647)
T Consensus       274 G~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGA--TSGGsmDAS-NLLKPaL-------~~G~iRCI  343 (774)
T TIGR02639       274 GTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGA--TSGGSMDAS-NLLKPAL-------ASGKIRCI  343 (774)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCC--CCCHHHHHH-HHHHHHH-------HCCCEEEE
T ss_conf             4564102454247899999999985289995466411010331787--875155244-3211253-------07877862


Q ss_pred             EECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             96298100-----8833316564231410001347889999999
Q gi|254780545|r  291 AATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       291 ~aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
T Consensus       344 GsTTy~EY~~~FeKDrALsR--RFQ-KIDv~EPs~eet~~ILkG  384 (774)
T TIGR02639       344 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKG  384 (774)
T ss_pred             CCCCHHHHHCHHHCCCCCCC--CCC-EECCCCCCHHHHHHHHHH
T ss_conf             26524864111010202165--423-311795788899999986