HHsearch alignment for GI: 254780545 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.37 E-value=2.1e-12 Score=108.70 Aligned_cols=159 Identities=28% Similarity=0.471 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH----HHHHHHCCCCCC-------EECCCH
Q ss_conf 698898528899999999987433567664201233311003787425888----999974246997-------020585
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTL----LARAVAGEANVP-------FFTISG 214 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTl----la~a~a~e~~~~-------f~~~~~ 214 (647)
T Consensus 206 kiDPLIGRE~El---eRtiQvLCRR~KN---------NPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDm 273 (774)
T TIGR02639 206 KIDPLIGREDEL---ERTIQVLCRRKKN---------NPLLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDM 273 (774)
T ss_pred CCCCCCCCHHHH---HHHHHHHCCCCCC---------CCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECH
T ss_conf 878734566887---4233320345678---------8720448886448999999998641564670024783454043
Q ss_pred HHHH--HHHHHCCHHHHHHHHHHHHHHCCH-HEEHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 7886--444203324599999999873780-1206323564144557898862-68898899899853032357782999
Q gi|254780545|r 215 SDFV--ELFVGVGASRVRDMFEQAKNNSPC-IVFVDEIDAVGRHRGIGLGGGN-DEREQTLNQLLVEMDGFESSEGVILI 290 (647)
Q Consensus 215 s~~~--~~~~g~g~~~vr~lf~~a~~~~p~-iifiDeida~~~~r~~~~~~~~-~e~~~~ln~ll~~mdg~~~~~~v~vi 290 (647)
T Consensus 274 G~LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGA--TSGGsmDAS-NLLKPaL-------~~G~iRCI 343 (774)
T TIGR02639 274 GTLLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGA--TSGGSMDAS-NLLKPAL-------ASGKIRCI 343 (774)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCC--CCCHHHHHH-HHHHHHH-------HCCCEEEE
T ss_conf 4564102454247899999999985289995466411010331787--875155244-3211253-------07877862
Q ss_pred EECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 96298100-----8833316564231410001347889999999
Q gi|254780545|r 291 AATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 291 ~aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
T Consensus 344 GsTTy~EY~~~FeKDrALsR--RFQ-KIDv~EPs~eet~~ILkG 384 (774)
T TIGR02639 344 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKG 384 (774)
T ss_pred CCCCHHHHHCHHHCCCCCCC--CCC-EECCCCCCHHHHHHHHHH
T ss_conf 26524864111010202165--423-311795788899999986