HHsearch alignment for GI: 254780545 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=97.52 E-value=4.1e-05 Score=55.97 Aligned_cols=144 Identities=31% Similarity=0.407 Sum_probs=85.1
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCH------HHHHHHHHHCCHHHHHHHH--------
Q ss_conf 33567664201233311003787425888999974246997020585------7886444203324599999--------
Q gi|254780545|r 168 CDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFVELFVGVGASRVRDMF-------- 233 (647)
Q Consensus 168 ~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~------s~~~~~~~g~g~~~vr~lf-------- 233 (647)
T Consensus 12 ~R~l~yL~~G----~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~ 87 (265)
T TIGR02640 12 SRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNVVKLE 87 (265)
T ss_pred HHHHHHHCCC----CCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCC
T ss_conf 9876632278----866744788855689999999736896899865823265442315467522223201211134251
Q ss_pred ------------HHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------HHCCCCCCCC-------E
Q ss_conf ------------9998737801206323564144557898862688988998998-------5303235778-------2
Q gi|254780545|r 234 ------------EQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV-------EMDGFESSEG-------V 287 (647)
Q Consensus 234 ------------~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~-------~mdg~~~~~~-------v 287 (647)
T Consensus 88 d~~~~~W~D~rLt~Av~e-G~TLVYdEF~---RskP-----------~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~F 152 (265)
T TIGR02640 88 DIVRQNWVDNRLTLAVRE-GFTLVYDEFT---RSKP-----------ETNNVLLSVLEEGVLELPGKRGESRYVDVHPEF 152 (265)
T ss_pred CCCCCCCCCCHHHHHHHC-CCEEEECCCC---CCCC-----------HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC
T ss_conf 220026678357899756-9727664757---8862-----------045656755552321588878778722578870
Q ss_pred EEEEECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC
Q ss_conf 99996298100-----88333165642314100013478899999998548
Q gi|254780545|r 288 ILIAATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN 333 (647)
Q Consensus 288 ~vi~aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~ 333 (647)
T Consensus 153 R~IfTSNp~EYAGVh~~QDALlD--RL-~ti~~D~~D~~~e~ai~~~~t~~ 200 (265)
T TIGR02640 153 RVIFTSNPVEYAGVHETQDALLD--RL-VTISMDYPDEDTETAILRAKTDV 200 (265)
T ss_pred CEEECCCCCCCCCCCCHHHHHHH--HH-CCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 24631487010576771667766--44-00457854447899999986061