HHsearch alignment for GI: 254780545 and conserved domain: TIGR02858
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=95.95 E-value=0.022 Score=36.23 Aligned_cols=117 Identities=31% Similarity=0.476 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC--CCCEECCCH---------HHHHHHHHHC-----
Q ss_conf 999987433567664201233311003787425888999974246--997020585---------7886444203-----
Q gi|254780545|r 161 QEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA--NVPFFTISG---------SDFVELFVGV----- 224 (647)
Q Consensus 161 ~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~--~~~f~~~~~---------s~~~~~~~g~----- 224 (647)
T Consensus 110 ~~~~~yL~d~------~~-~~~NTLiIsPPq~GKTTlLRDlaR~~StG~~~~~~~g~KVgivDERSEIAgC~~GvPQ~~v 182 (282)
T TIGR02858 110 DKILPYLVDR------NG-RVLNTLIISPPQCGKTTLLRDLARILSTGISKLGLKGKKVGIVDERSEIAGCVNGVPQLDV 182 (282)
T ss_pred HHHHHHHHCC------CC-CEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCC
T ss_conf 6668877305------89-4467888868898851048889888607854246899746998432465654588241446
Q ss_pred C--------HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 3--------24599999999873780120632356414455789886268898899899853032357782999962981
Q gi|254780545|r 225 G--------ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRP 296 (647)
Q Consensus 225 g--------~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~ 296 (647)
T Consensus 183 G~RtDVLD~CPKAEGmMM~iRSMSP~Viv~DEIG-----------r~ED-----~~Al~eA-----~naGV~~I~-TaHg 240 (282)
T TIGR02858 183 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG-----------REED-----VEALLEA-----LNAGVSVIA-TAHG 240 (282)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCCEEEEECCC-----------CHHH-----HHHHHHH-----HCCCCEEEE-EECC
T ss_conf 7606751788537899999970698579981488-----------9533-----8999998-----616756887-6404
Q ss_pred CCCCHHHCCC
Q ss_conf 0088333165
Q gi|254780545|r 297 DVLDAALLRP 306 (647)
Q Consensus 297 ~~lD~al~Rp 306 (647)
T Consensus 241 ~~~~Dl~kRP 250 (282)
T TIGR02858 241 RDLEDLKKRP 250 (282)
T ss_pred CCHHHHHCCH
T ss_conf 8812665076