HHsearch alignment for GI: 254780545 and conserved domain: TIGR02881
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=99.17 E-value=4.5e-10 Score=91.88 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEECCCCCHHHHHHHHHHHCC---CCC----CEECCCHH
Q ss_conf 69889852889999999998743356766420123331---100378742588899997424---699----70205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG---VLLVGPPGTGKTLLARAVAGE---ANV----PFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g---~ll~GppGtGKTlla~a~a~e---~~~----~f~~~~~s 215 (647)
T Consensus 4 EL~~~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ERA 83 (261)
T TIGR02881 4 ELSRLVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 35640488899999999999999988887510114884478774278668438999999999853375678867887622
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-EEEEEECC
Q ss_conf 88644420332459999999987378012063235641445578988626889889989985303235778-29999629
Q gi|254780545|r 216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEG-VILIAATN 294 (647)
Q Consensus 216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~-v~vi~aTn 294 (647)
T Consensus 84 DLVGEYIGHTAqkTRe~~kkA---~GGvLFiDEAYSLa--RGGEKDFG---KE-AIDtLVK~mE--d~~~~lvlILA--G 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA---LGGVLFIDEAYSLA--RGGEKDFG---KE-AIDTLVKAME--DQRNELVLILA--G 150 (261)
T ss_pred CCCCCCCCCHHHHHHHHHHHH---CCCCHHHHHHHHHH--CCCCCCCC---CH-HHHHHHHHHH--HCCCCEEEEEE--C
T ss_conf 212232030048999999986---38800557777761--48888766---20-8889999876--15698689970--8
Q ss_pred CCCCCCHHHC-CCC---CCCCEEEECHHHHHHHHHHHHHHHCCC--CCCCCC--CH----HHHHHHHH-CCC-HHHHHHH
Q ss_conf 8100883331-656---423141000134788999999985488--777321--10----24544120-379-8999999
Q gi|254780545|r 295 RPDVLDAALL-RPG---RFDRQITVPNPDIVGREHILMVHSRNV--PLAPNV--IL----KTIARGTP-GFS-GADLRNL 360 (647)
Q Consensus 295 ~~~~lD~al~-Rpg---Rfd~~i~~~~P~~~~r~~i~~~~~~~~--~~~~~~--d~----~~la~~t~-g~s-gAdi~~~ 360 (647)
T Consensus 151 Y~~EM~yFL~~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~vRN~ 230 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLAKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred CHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 76899998620779777665054188998889999999998646422578899999999741244421005762012428
Q ss_pred HHHHHHH-HHHH-HCCCCCHHHHH
Q ss_conf 9998764-5532-02421045689
Q gi|254780545|r 361 VNEAALM-AARR-NRRLVTMQEFE 382 (647)
Q Consensus 361 ~~eAa~~-a~r~-~~~~i~~~dl~ 382 (647)
T Consensus 231 iE~AIR~QAvRlL~~~~~~k~dL~ 254 (261)
T TIGR02881 231 IEKAIRRQAVRLLKKSDYSKEDLM 254 (261)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 899999999876434643589999