HHsearch alignment for GI: 254780545 and conserved domain: TIGR02903
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.42 E-value=2.3e-13 Score=115.69 Aligned_cols=284 Identities=23% Similarity=0.334 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246----------9970205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s 215 (647)
T Consensus 153 ~f~EiVGQerAI~aLl------------aK~aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGt 220 (616)
T TIGR02903 153 AFSEIVGQERAIKALL------------AKLASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGT 220 (616)
T ss_pred CCCCCCCHHHHHHHHH------------HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC
T ss_conf 6764333468999999------------7631888660785573388478999998762136874476113785751576
Q ss_pred HHH-------HHHHH-------CCHHHHHHHHHHHHHH------------CCHHEEHHHHH---HHH---------CCCC
Q ss_conf 886-------44420-------3324599999999873------------78012063235---641---------4455
Q gi|254780545|r 216 DFV-------ELFVG-------VGASRVRDMFEQAKNN------------SPCIVFVDEID---AVG---------RHRG 257 (647)
Q Consensus 216 ~~~-------~~~~g-------~g~~~vr~lf~~a~~~------------~p~iifiDeid---a~~---------~~r~ 257 (647)
T Consensus 221 TLRWDPREvTNPLLGSVHDPIYQGa~R--D---LAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV 295 (616)
T TIGR02903 221 TLRWDPREVTNPLLGSVHDPIYQGARR--D---LAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRV 295 (616)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCH--H---HCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEE
T ss_conf 266774101477677625765567640--1---10478798989871004775676502112227876324443226436
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECC-CCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCC-
Q ss_conf 78988626889889989985303235--77829999629-810088333165642314100013478899999998548-
Q gi|254780545|r 258 IGLGGGNDEREQTLNQLLVEMDGFES--SEGVILIAATN-RPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRN- 333 (647)
Q Consensus 258 ~~~~~~~~e~~~~ln~ll~~mdg~~~--~~~v~vi~aTn-~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~- 333 (647)
T Consensus 296 ~F~SsYYDpdD~NvPkYIK~l--Fe~GAPADFvLIGATTr~P~eINpALRS--RCa-EvfFePL~p~dI~~Iv~~AA~kl 370 (616)
T TIGR02903 296 EFSSSYYDPDDENVPKYIKKL--FEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIKEIVLNAAEKL 370 (616)
T ss_pred EEEECCCCCCCCCCCHHHHHH--HCCCCCCCEEEECCCCCCHHHCCHHHHC--CCC-EEECCCCCHHHHHHHHHHHHHHC
T ss_conf 653212487537865588885--2268882568726615882440512330--143-13217988789999999988861
Q ss_pred -CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf -87773211024544120379899999999987645--------532024210456899975013686556766686677
Q gi|254780545|r 334 -VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA--------ARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEK 404 (647)
Q Consensus 334 -~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a--------~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek 404 (647)
T Consensus 371 nv~L~~gV-~e~Ia~YTi--eGRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~--------~sRl~Py~~~ 439 (616)
T TIGR02903 371 NVKLAEGV-EELIARYTI--EGRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQ--------ISRLSPYEKV 439 (616)
T ss_pred CCCCCCCH-HHHHHHCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH--------HCCCCCHHHC
T ss_conf 77000364-878721471--311222346546767653045556777742661867776775--------3045750112
Q ss_pred HHHHHHHHHHHH----HHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHH
Q ss_conf 899999999999----9985058773234322014555640564002443226899999999999
Q gi|254780545|r 405 KITAYHEAGHAV----VACHVPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTIL 465 (647)
Q Consensus 405 ~~vAyHEAGHAl----va~~l~~~~~v~kVTIipRg~alG~t~~~p~~d~~~~tk~~l~~~i~v~ 465 (647)
T Consensus 440 ~~~~~~EvG~vFGLGV~gy-~GS~lEIEa~aF~A~~~GkG~~RfN--dTAGSMaKDSvFNAasvi 501 (616)
T TIGR02903 440 KASDTYEVGHVFGLGVSGY-LGSVLEIEAVAFEAKEKGKGTVRFN--DTAGSMAKDSVFNAASVI 501 (616)
T ss_pred CCCCCCCEEEEEECCCCCC-CCCEEEEEEEEECCCCCCCEEEEEE--CCCCCCHHHHHHHHHHHH
T ss_conf 4688863046870421210-0233355504423778995058861--565530357789889998