HHsearch alignment for GI: 254780545 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27  E-value=2.2e-10  Score=94.08  Aligned_cols=160  Identities=26%  Similarity=0.393  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246----------9970205857
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGS  215 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s  215 (647)
T Consensus       185 klDPvIGRd~---EI~r~iqIL~R---------r~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg  252 (852)
T TIGR03345       185 KIDPVLGRDD---EIRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG  252 (852)
T ss_pred             CCCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHH
T ss_conf             9998869499---99999999986---------24799746579998799999999999976999867743856786788


Q ss_pred             HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r  216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA  292 (647)
Q Consensus       216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a  292 (647)
T Consensus       253 ~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~--~~G~~Daa-NiLKPaL-------arGelr~IGA  322 (852)
T TIGR03345       253 LLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGG--QAGQGDAA-NLLKPAL-------ARGELRTIAA  322 (852)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf             886403576359999999999998489976999634877528998--88862278-8751787-------3787349983


Q ss_pred             CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf             29810-----088333165642314100013478899999998
Q gi|254780545|r  293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVH  330 (647)
Q Consensus       293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~  330 (647)
T Consensus       323 TT~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~eeti~IL~gl  362 (852)
T TIGR03345       323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGL  362 (852)
T ss_pred             CCHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHHH
T ss_conf             578999888642688996--247-5527999879999999987