HHsearch alignment for GI: 254780545 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=2.2e-10 Score=94.08 Aligned_cols=160 Identities=26% Similarity=0.393 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246----------9970205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~~s 215 (647)
T Consensus 185 klDPvIGRd~---EI~r~iqIL~R---------r~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg 252 (852)
T TIGR03345 185 KIDPVLGRDD---EIRQMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG 252 (852)
T ss_pred CCCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHH
T ss_conf 9998869499---99999999986---------24799746579998799999999999976999867743856786788
Q ss_pred HHH--HHHHHCCHHHHHHHHHHHHHH-CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 886--444203324599999999873-78012063235641445578988626889889989985303235778299996
Q gi|254780545|r 216 DFV--ELFVGVGASRVRDMFEQAKNN-SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAA 292 (647)
Q Consensus 216 ~~~--~~~~g~g~~~vr~lf~~a~~~-~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~a 292 (647)
T Consensus 253 ~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFIDEiHtlvGAG~--~~G~~Daa-NiLKPaL-------arGelr~IGA 322 (852)
T TIGR03345 253 LLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGG--QAGQGDAA-NLLKPAL-------ARGELRTIAA 322 (852)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCC--CCCCCCHH-HHHHHHH-------HCCCCEEEEE
T ss_conf 886403576359999999999998489976999634877528998--88862278-8751787-------3787349983
Q ss_pred CCCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 29810-----088333165642314100013478899999998
Q gi|254780545|r 293 TNRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMVH 330 (647)
Q Consensus 293 Tn~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~ 330 (647)
T Consensus 323 TT~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~eeti~IL~gl 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred CCHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHHH
T ss_conf 578999888642688996--247-5527999879999999987