HHsearch alignment for GI: 254780545 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22  E-value=1.3e-10  Score=95.83  Aligned_cols=126  Identities=30%  Similarity=0.455  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf             8898528899999999987433567664201233---31-1003787425888999974246---997020585788644
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP---HG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL  220 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p---~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~  220 (647)
T Consensus       566 ~~ViGQ~~Av~~v~~ai~~-------sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~  638 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRT-------ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA  638 (852)
T ss_pred             HHHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCH
T ss_conf             9972849999999999999-------871799999985689987899877899999999997198611478422432104


Q ss_pred             ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCC--
Q ss_conf             ------------420332459999999987378012063235641445578988626889889989985303--2357--
Q gi|254780545|r  221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESS--  284 (647)
Q Consensus       221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~--  284 (647)
T Consensus       639 hsvsrLiGaPPGYVGy~eG--G~LTe~Vrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlD~G~LtD~~G  702 (852)
T TIGR03345       639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEK-----------AH---PDVLELFYQVFDKGVMEDGEG  702 (852)
T ss_pred             HHHHHHCCCCCCCCCCCCC--CHHHHHHHHCCCEEEEECHHHH-----------CC---HHHHHHHHHHHCCCEEECCCC
T ss_conf             3687863899976674877--7210988809986888611300-----------28---899999998724677757999


Q ss_pred             -----CCEEEEEECCCC
Q ss_conf             -----782999962981
Q gi|254780545|r  285 -----EGVILIAATNRP  296 (647)
Q Consensus       285 -----~~v~vi~aTn~~  296 (647)
T Consensus       703 r~vdF~NtIIImTSN~G  719 (852)
T TIGR03345       703 REIDFKNTVILLTSNAG  719 (852)
T ss_pred             CEEECEEEEEEECCCHH
T ss_conf             98845212999757244