HHsearch alignment for GI: 254780545 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.22 E-value=1.3e-10 Score=95.83 Aligned_cols=126 Identities=30% Similarity=0.455 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf 8898528899999999987433567664201233---31-1003787425888999974246---997020585788644
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIP---HG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL 220 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p---~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~ 220 (647)
T Consensus 566 ~~ViGQ~~Av~~v~~ai~~-------sraGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~DMSEy~E~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRT-------ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred HHHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCH
T ss_conf 9972849999999999999-------871799999985689987899877899999999997198611478422432104
Q ss_pred ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCC--
Q ss_conf ------------420332459999999987378012063235641445578988626889889989985303--2357--
Q gi|254780545|r 221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESS-- 284 (647)
Q Consensus 221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~-- 284 (647)
T Consensus 639 hsvsrLiGaPPGYVGy~eG--G~LTe~Vrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlD~G~LtD~~G 702 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEK-----------AH---PDVLELFYQVFDKGVMEDGEG 702 (852)
T ss_pred HHHHHHCCCCCCCCCCCCC--CHHHHHHHHCCCEEEEECHHHH-----------CC---HHHHHHHHHHHCCCEEECCCC
T ss_conf 3687863899976674877--7210988809986888611300-----------28---899999998724677757999
Q ss_pred -----CCEEEEEECCCC
Q ss_conf -----782999962981
Q gi|254780545|r 285 -----EGVILIAATNRP 296 (647)
Q Consensus 285 -----~~v~vi~aTn~~ 296 (647)
T Consensus 703 r~vdF~NtIIImTSN~G 719 (852)
T TIGR03345 703 REIDFKNTVILLTSNAG 719 (852)
T ss_pred CEEECEEEEEEECCCHH
T ss_conf 98845212999757244