HHsearch alignment for GI: 254780545 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.30 E-value=1.2e-10 Score=96.08 Aligned_cols=125 Identities=28% Similarity=0.455 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-CCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH-
Q ss_conf 89852889999999998743356766420123---3-311003787425888999974246---997020585788644-
Q gi|254780545|r 149 DVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI---P-HGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL- 220 (647)
Q Consensus 149 dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~---p-~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~- 220 (647)
T Consensus 566 rViGQd~AI~~I~~aI~~-------sraGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E~h 638 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRR-------SRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred HHCCHHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCCHH
T ss_conf 971709999999999999-------9718888999745899867887768999999999985585206984304430122
Q ss_pred -----------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCCC--
Q ss_conf -----------420332459999999987378012063235641445578988626889889989985303--23577--
Q gi|254780545|r 221 -----------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESSE-- 285 (647)
Q Consensus 221 -----------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~~-- 285 (647)
T Consensus 639 svsrLiGaPPGYVGy~eg--G~Lte~vr~~PysVvL~DEIEK-----------Ah---~~V~~~lLQilD~G~ltD~~Gr 702 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEK-----------AH---PDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred HHHHHCCCCCCCCCCCCC--CEECHHHHHCCCEEEEECCHHH-----------HC---HHHHHHHHHHHCCCEEECCCCC
T ss_conf 477855899976776878--7423989819887998530543-----------07---6899999988236743079998
Q ss_pred -----CEEEEEECCCC
Q ss_conf -----82999962981
Q gi|254780545|r 286 -----GVILIAATNRP 296 (647)
Q Consensus 286 -----~v~vi~aTn~~ 296 (647)
T Consensus 703 ~vdF~NtiiimTSN~G 718 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLG 718 (852)
T ss_pred EEEEEEEEEEEECCCC
T ss_conf 8853556898615406