HHsearch alignment for GI: 254780545 and conserved domain: TIGR03348

>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

Probab=94.34  E-value=0.19  Score=29.49  Aligned_cols=41  Identities=41%  Similarity=0.806  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHH
Q ss_conf             288999999999874335676642012-----3331100378742588899
Q gi|254780545|r  153 VDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLA  198 (647)
Q Consensus       153 ~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla  198 (647)
T Consensus        83 ~~~l~~r~~~al~~Lk~~~----~~g~~~ly~LP-WYlviG~~gsGKTt~l  128 (1169)
T TIGR03348        83 IRELRARFNEALALLKRSR----LGGRRYLYDLP-WYLVIGPPGSGKTTLL  128 (1169)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CCCCCHHHHCC-EEEEECCCCCCHHHHH
T ss_conf             9999999999999997552----68732264389-5899789998668999