HHsearch alignment for GI: 254780545 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.83 E-value=2.8e-20 Score=165.72 Aligned_cols=129 Identities=39% Similarity=0.516 Sum_probs=100.7
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCHHHH---HHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf 233311003787425888999974246---997020585788644420332459---99999998737801206323564
Q gi|254780545|r 179 RIPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGASRV---RDMFEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 179 ~~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~~~v---r~lf~~a~~~~p~iifiDeida~ 252 (647)
T Consensus 17 ~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 96 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHC
T ss_conf 79980899899998865999999997121379827854777046777757605778898999999769986982016655
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECH
Q ss_conf 14455789886268898899899853032357782999962981008833316564231410001
Q gi|254780545|r 253 GRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPN 317 (647)
Q Consensus 253 ~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~ 317 (647)
T Consensus 97 ~~~----------~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~~~~~~~~~~R~~~~i~~~~ 151 (151)
T cd00009 97 SRG----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred CHH----------HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCEEEECCC
T ss_conf 999----------9999999998715754067888999952899886837764255986986389