HHsearch alignment for GI: 254780545 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0077 Score=39.55 Aligned_cols=121 Identities=33% Similarity=0.506 Sum_probs=66.0
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCC--EECCCHHHH-------HHHHHH-----CCHHHHHHHHHHHHH
Q ss_conf 420123331--1003787425888999974246997--020585788-------644420-----332459999999987
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEANVP--FFTISGSDF-------VELFVG-----VGASRVRDMFEQAKN 238 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~--f~~~~~s~~-------~~~~~g-----~g~~~vr~lf~~a~~ 238 (647)
T Consensus 17 ~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~QLSgGqkqrv~iA~al~ 96 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 11789879979999878899989999999588479962899999999979999999406087668869999999999997
Q ss_pred HCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf 37801206323564144557898862688988998998530323577829999629810088333165642314100
Q gi|254780545|r 239 NSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITV 315 (647)
Q Consensus 239 ~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~ 315 (647)
T Consensus 97 ~~p~ililDEPts-------gL---D~~~~~~l~~~i~~l---~~-~g~tii~vtH~~~~~~~~------~d~v~~~ 153 (157)
T cd00267 97 LNPDLLLLDEPTS-------GL---DPASRERLLELLREL---AE-EGRTVIIVTHDPELAELA------ADRVIVL 153 (157)
T ss_pred CCCCEEEEECCCC-------CC---CHHHHHHHHHHHHHH---HH-CCCEEEEEECCHHHHHHH------CCEEEEE
T ss_conf 0999999969876-------68---999999999999999---96-899999990899999997------9999997