HHsearch alignment for GI: 254780545 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.0013 Score=45.08 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=24.1
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 20123331--100378742588899997424699
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV 207 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~ 207 (647)
T Consensus 12 L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~ 45 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQL 45 (235)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 0799647879999999998499999999999842