HHsearch alignment for GI: 254780545 and conserved domain: cd01123

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11  E-value=0.0013  Score=45.08  Aligned_cols=32  Identities=38%  Similarity=0.579  Sum_probs=24.1

Q ss_pred             HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf             20123331--100378742588899997424699
Q gi|254780545|r  176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV  207 (647)
Q Consensus       176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~  207 (647)
T Consensus        12 L~GGi~~G~itEi~G~~GsGKTql~lqla~~~~~   45 (235)
T cd01123          12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQL   45 (235)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             0799647879999999998499999999999842