HHsearch alignment for GI: 254780545 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.25 E-value=0.0041 Score=41.55 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=45.5
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHCCCCC--CEECCCH--------HHHHHHHH------HCCHHHHHHHHHHHHHHC
Q ss_conf 0123331100378742588899997424699--7020585--------78864442------033245999999998737
Q gi|254780545|r 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEANV--PFFTISG--------SDFVELFV------GVGASRVRDMFEQAKNNS 240 (647)
Q Consensus 177 g~~~p~g~ll~GppGtGKTlla~a~a~e~~~--~f~~~~~--------s~~~~~~~------g~g~~~vr~lf~~a~~~~ 240 (647)
T Consensus 21 ~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~~~~~~li~~aLR~~ 100 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEEEEEECCCCCCCCEECHHHHHHHHCCCC
T ss_conf 99859989998999998999999999613345645984153540477775688886046457865034999988736689
Q ss_pred CHHEEHHHHH
Q ss_conf 8012063235
Q gi|254780545|r 241 PCIVFVDEID 250 (647)
Q Consensus 241 p~iifiDeid 250 (647)
T Consensus 101 pd~iivGEiR 110 (186)
T cd01130 101 PDRIIVGEVR 110 (186)
T ss_pred CCEEECCCCC
T ss_conf 9737317568