HHsearch alignment for GI: 254780545 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.34 E-value=0.0013 Score=45.09 Aligned_cols=40 Identities=40% Similarity=0.569 Sum_probs=27.4
Q ss_pred HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH
Q ss_conf 420123331--1003787425888999974246---997020585
Q gi|254780545|r 175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG 214 (647)
Q Consensus 175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~ 214 (647)
T Consensus 11 vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yidt 55 (218)
T cd01394 11 LLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 856998788799998999984999999999998636986999966