HHsearch alignment for GI: 254780545 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.34  E-value=0.0013  Score=45.09  Aligned_cols=40  Identities=40%  Similarity=0.569  Sum_probs=27.4

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC---CCCEECCCH
Q ss_conf             420123331--1003787425888999974246---997020585
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA---NVPFFTISG  214 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~  214 (647)
T Consensus        11 vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~Yidt   55 (218)
T cd01394          11 LLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT   55 (218)
T ss_pred             HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             856998788799998999984999999999998636986999966