HHsearch alignment for GI: 254780545 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.12 Score=30.85 Aligned_cols=108 Identities=22% Similarity=0.363 Sum_probs=56.1
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCCCC-----CEE--------------------------CCCHHHHHHHHH
Q ss_conf 20123331--100378742588899997424699-----702--------------------------058578864442
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEANV-----PFF--------------------------TISGSDFVELFV 222 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~-----~f~--------------------------~~~~s~~~~~~~ 222 (647)
T Consensus 19 vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSg 98 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCH
T ss_conf 08788799399998789979999999997685778788999999988684888657899956876671267789863398
Q ss_pred HCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 033245999999998737801206323564144557898862688988998998530323577829999629810088
Q gi|254780545|r 223 GVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 (647)
Q Consensus 223 g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD 300 (647)
T Consensus 99 ---G~kqrv~ia~al~~~p~lllLDEPt-----~gLD~----~~~-~~i~~~i~~l---~~-~g~tvi~~tH~l~~~~ 159 (173)
T cd03230 99 ---GMKQRLALAQALLHDPELLILDEPT-----SGLDP----ESR-REFWELLREL---KK-EGKTILLSSHILEEAE 159 (173)
T ss_pred ---HHHHHHHHHHHHHCCCCEEEECCCC-----CCCCH----HHH-HHHHHHHHHH---HH-CCCEEEEECCCHHHHH
T ss_conf ---9999999999996499999990886-----57999----999-9999999999---96-8999999928389999