HHsearch alignment for GI: 254780545 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.061 Score=33.04 Aligned_cols=38 Identities=32% Similarity=0.624 Sum_probs=26.9
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCCCCCCEECCCHH
Q ss_conf 0123331--10037874258889999742469970205857
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGEANVPFFTISGS 215 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s 215 (647)
T Consensus 27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~-~~~~~~G~ 66 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE-GNVSVEGD 66 (202)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEE
T ss_conf 88980984999998999988999999837878-98751379