HHsearch alignment for GI: 254780545 and conserved domain: cd03245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.58 E-value=0.043 Score=34.13 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=25.1
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 66420123331--1003787425888999974246
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
T Consensus 20 L~~isl~i~~G~~v~ivG~sGsGKSTLl~ll~gl~ 54 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 53459998799999999999985999999996725