HHsearch alignment for GI: 254780545 and conserved domain: cd03247

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.19  E-value=0.027  Score=35.66  Aligned_cols=34  Identities=29%  Similarity=0.610  Sum_probs=26.6

Q ss_pred             HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             66420123331--10037874258889999742469
Q gi|254780545|r  173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEAN  206 (647)
Q Consensus       173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~~  206 (647)
T Consensus        18 L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~   53 (178)
T cd03247          18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             EECEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             325589986999999999998759999999986176