HHsearch alignment for GI: 254780545 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.34 E-value=0.049 Score=33.72 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=13.8
Q ss_pred HCCCCCC--EEECCCCCHHHHHHHHHHHCC
Q ss_conf 0123331--100378742588899997424
Q gi|254780545|r 177 GGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 (647)
Q Consensus 177 g~~~p~g--~ll~GppGtGKTlla~a~a~e 204 (647)
T Consensus 34 s~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl 63 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 899829999999999998499999999645