HHsearch alignment for GI: 254780545 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.018 Score=36.92 Aligned_cols=33 Identities=36% Similarity=0.628 Sum_probs=24.1
Q ss_pred HHHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 66420123331--1003787425888999974246
Q gi|254780545|r 173 FKRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 173 ~~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
T Consensus 18 L~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~ 52 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 53608998799999999899982999999996676