HHsearch alignment for GI: 254780545 and conserved domain: cd03254
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.02 Score=36.55 Aligned_cols=32 Identities=38% Similarity=0.488 Sum_probs=21.9
Q ss_pred HHHHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 6420123331--1003787425888999974246
Q gi|254780545|r 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 174 ~~~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
T Consensus 20 ~~inl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 53 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 4629998799999999999980999999996686