HHsearch alignment for GI: 254780545 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.025 Score=35.86 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=23.9
Q ss_pred HHCCCCCC--EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 20123331--1003787425888999974246
Q gi|254780545|r 176 LGGRIPHG--VLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 176 ~g~~~p~g--~ll~GppGtGKTlla~a~a~e~ 205 (647)
T Consensus 43 vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~ 74 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 47588899999999899848999999997599